PubMed

TreeDyn: towards dynamic graphics and annotations for analyses of trees.

Chevenet F, Brun C, Bañuls AL, Jacq B, Christen R.

BMC Bioinformatics. 2006 Oct 10;7:439.PMID: 17032440 [PubMed - indexed for MEDLINE]Related articlesFree article

Dendroscope: An interactive viewer for large phylogenetic trees.

Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, Rupp R.

BMC Bioinformatics. 2007 Nov 22;8:460.PMID: 18034891 [PubMed - indexed for MEDLINE]Related articlesFree article

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation.

Letunic I, Bork P.

Bioinformatics. 2007 Jan 1;23(1):127-8. Epub 2006 Oct 18.PMID: 17050570 [PubMed - indexed for MEDLINE]Related articlesFree article

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.PMID: 17062145 [PubMed - indexed for MEDLINE]Related articlesFree article

PHY.FI: fast and easy online creation and manipulation of phylogeny color figures.

Fredslund J.

BMC Bioinformatics. 2006 Jun 22;7:315.PMID: 16792795 [PubMed - indexed for MEDLINE]Related articlesFree article

ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.

Huan T, Sivachenko AY, Harrison SH, Chen JY.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S5.PMID: 18793469 [PubMed - indexed for MEDLINE]Related articlesFree article

TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities.

Gu S, Anderson I, Kunin V, Cipriano M, Minovitsky S, Weber G, Amenta N, Hamann B, Dubchak I.

Bioinformatics. 2007 Mar 15;23(6):764-6. Epub 2007 Jan 17.PMID: 17234642 [PubMed - indexed for MEDLINE]Related articlesFree article

SiPaGene: A new repository for instant online retrieval, sharing and meta-analyses of GeneChip expression data.

Menssen A, Edinger G, Grün JR, Haase U, Baumgrass R, Grützkau A, Radbruch A, Burmester GR, Häupl T.

BMC Genomics. 2009 Mar 5;10:98.PMID: 19265543 [PubMed - indexed for MEDLINE]Related articlesFree article

Paloverde: an OpenGL 3D phylogeny browser.

Sanderson MJ.

Bioinformatics. 2006 Apr 15;22(8):1004-6. Epub 2006 Feb 24.PMID: 16500938 [PubMed - indexed for MEDLINE]Related articlesFree article

primetv: a viewer for reconciled trees.

Sennblad B, Schreil E, Berglund Sonnhammer AC, Lagergren J, Arvestad L.

BMC Bioinformatics. 2007 May 7;8:148.PMID: 17484781 [PubMed - indexed for MEDLINE]Related articlesFree article

A novel method for large tree visualization.

Heard J, Kaufmann W, Guan X.

Bioinformatics. 2009 Feb 15;25(4):557-8. Epub 2009 Jan 7.PMID: 19129207 [PubMed - indexed for MEDLINE]Related articlesFree article

PhyloFinder: an intelligent search engine for phylogenetic tree databases.

Chen D, Burleigh JG, Bansal MS, Fernández-Baca D.

BMC Evol Biol. 2008 Mar 21;8:90.PMID: 18366717 [PubMed - indexed for MEDLINE]Related articlesFree article

VisualRepbase: an interface for the study of occurrences of transposable element families.

Tempel S, Jurka M, Jurka J.

BMC Bioinformatics. 2008 Aug 18;9:345.PMID: 18710569 [PubMed - indexed for MEDLINE]Related articlesFree article

PhyloExplorer: a web server to validate, explore and query phylogenetic trees.

Ranwez V, Clairon N, Delsuc F, Pourali S, Auberval N, Diser S, Berry V.

BMC Evol Biol. 2009 May 18;9:108.PMID: 19450253 [PubMed - indexed for MEDLINE]Related articlesFree article

Visualising very large phylogenetic trees in three dimensional hyperbolic space.

Hughes T, Hyun Y, Liberles DA.

BMC Bioinformatics. 2004 Apr 29;5:48.PMID: 15117420 [PubMed - indexed for MEDLINE]Related articlesFree article

TaxMan: a taxonomic database manager.

Jones M, Blaxter M.

BMC Bioinformatics. 2006 Dec 18;7:536.PMID: 17176465 [PubMed - indexed for MEDLINE]Related articlesFree article

PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.

Hanekamp K, Bohnebeck U, Beszteri B, Valentin K.

Bioinformatics. 2007 Apr 1;23(7):793-801. Epub 2007 Mar 1.PMID: 17332025 [PubMed - indexed for MEDLINE]Related articlesFree article

Software tool for researching annotations of proteins: open-source protein annotation software with data visualization.

Bhatia VN, Perlman DH, Costello CE, McComb ME.

Anal Chem. 2009 Dec 1;81(23):9819-23.PMID: 19839595 [PubMed - in process]Related articles

Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D.

Porollo A, Meller J.

BMC Bioinformatics. 2007 Aug 29;8:316.PMID: 17727718 [PubMed - indexed for MEDLINE]Related articlesFree article

Visualizing phylogenetic trees using TreeView.

Page RD.

Curr Protoc Bioinformatics. 2002 Aug;Chapter 6:Unit 6.2.PMID: 18792942 [PubMed - indexed for MEDLINE]Related articles