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Loss of the flagellum happened only once in the fungal lineage: phylogenetic structure of kingdom Fungi inferred from RNA polymerase II subunit genes.

Liu YJ, Hodson MC, Hall BD.

BMC Evol Biol. 2006 Sep 29;6:74.PMID: 17010206 [PubMed - indexed for MEDLINE]Related articlesFree article

Phylogeny and systematics of the fungi with special reference to the Ascomycota and Basidiomycota.

Prillinger H, Lopandic K, Schweigkofler W, Deak R, Aarts HJ, Bauer R, Sterflinger K, Kraus GF, Maraz A.

Chem Immunol. 2002;81:207-95. Review. No abstract available. PMID: 12102002 [PubMed - indexed for MEDLINE]Related articles

A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota).

James TY, Letcher PM, Longcore JE, Mozley-Standridge SE, Porter D, Powell MJ, Griffith GW, Vilgalys R.

Mycologia. 2006 Nov-Dec;98(6):860-71.PMID: 17486963 [PubMed - indexed for MEDLINE]Related articles

Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences.

Bruns TD, Vilgalys R, Barns SM, Gonzalez D, Hibbett DS, Lane DJ, Simon L, Stickel S, Szaro TM, Weisburg WG, et al.

Mol Phylogenet Evol. 1992 Sep;1(3):231-41.PMID: 1342940 [PubMed - indexed for MEDLINE]Related articles

Evolutionary relationships among basal fungi (Chytridiomycota and Zygomycota): Insights from molecular phylogenetics.

Tanabe Y, Watanabe MM, Sugiyama J.

J Gen Appl Microbiol. 2005 Oct;51(5):267-76. Review.PMID: 16314681 [PubMed - indexed for MEDLINE]Related articlesFree article

Molecular evolution of the fungi: relationship of the Basidiomycetes, Ascomycetes, and Chytridiomycetes.

Bowman BH, Taylor JW, Brownlee AG, Lee J, Lu SD, White TJ.

Mol Biol Evol. 1992 Mar;9(2):285-96.PMID: 1560764 [PubMed - indexed for MEDLINE]Related articles

Phylogeny of the Zygomycota based on nuclear ribosomal sequence data.

White MM, James TY, O'Donnell K, Cafaro MJ, Tanabe Y, Sugiyama J.

Mycologia. 2006 Nov-Dec;98(6):872-84.PMID: 17486964 [PubMed - indexed for MEDLINE]Related articles

Evolutionary relationships of the cup-fungus genus Peziza and Pezizaceae inferred from multiple nuclear genes: RPB2, beta-tubulin, and LSU rDNA.

Hansen K, Lobuglio KF, Pfister DH.

Mol Phylogenet Evol. 2005 Jul;36(1):1-23. Epub 2005 Apr 22.PMID: 15904853 [PubMed - indexed for MEDLINE]Related articles

Molecular phylogeny of Zygomycota based on EF-1alpha and RPB1 sequences: limitations and utility of alternative markers to rDNA.

Tanabe Y, Saikawa M, Watanabe MM, Sugiyama J.

Mol Phylogenet Evol. 2004 Feb;30(2):438-49.PMID: 14715234 [PubMed - indexed for MEDLINE]Related articles

Reconstructing the early evolution of Fungi using a six-gene phylogeny.

James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, Stajich JE, Hosaka K, Sung GH, Johnson D, O'Rourke B, Crockett M, Binder M, Curtis JM, Slot JC, Wang Z, Wilson AW, Schüssler A, Longcore JE, O'Donnell K, Mozley-Standridge S, Porter D, Letcher PM, Powell MJ, Taylor JW, White MM, Griffith GW, Davies DR, Humber RA, Morton JB, Sugiyama J, Rossman AY, Rogers JD, Pfister DH, Hewitt D, Hansen K, Hambleton S, Shoemaker RA, Kohlmeyer J, Volkmann-Kohlmeyer B, Spotts RA, Serdani M, Crous PW, Hughes KW, Matsuura K, Langer E, Langer G, Untereiner WA, Lücking R, Büdel B, Geiser DM, Aptroot A, Diederich P, Schmitt I, Schultz M, Yahr R, Hibbett DS, Lutzoni F, McLaughlin DJ, Spatafora JW, Vilgalys R.

Nature. 2006 Oct 19;443(7113):818-22.PMID: 17051209 [PubMed - indexed for MEDLINE]Related articles

Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit.

Liu YJ, Whelen S, Hall BD.

Mol Biol Evol. 1999 Dec;16(12):1799-808.PMID: 10605121 [PubMed - indexed for MEDLINE]Related articlesFree article

Phylogenetic relationships among Taphrina, Saitoella, and other higher fungi.

Nishida H, Sugiyama J.

Mol Biol Evol. 1993 Mar;10(2):431-6.PMID: 8487639 [PubMed - indexed for MEDLINE]Related articles

Phylogeny of the glomeromycota (arbuscular mycorrhizal fungi): recent developments and new gene markers.

Redecker D, Raab P.

Mycologia. 2006 Nov-Dec;98(6):885-95.PMID: 17486965 [PubMed - indexed for MEDLINE]Related articles

Early diverging Ascomycota: phylogenetic divergence and related evolutionary enigmas.

Sugiyama J, Hosaka K, Suh SO.

Mycologia. 2006 Nov-Dec;98(6):996-1005.PMID: 17486975 [PubMed - indexed for MEDLINE]Related articles

A molecular evolutionary framework for eukaryotic model organisms.

Sidow A, Thomas WK.

Curr Biol. 1994 Jul 1;4(7):596-603.PMID: 7953533 [PubMed - indexed for MEDLINE]Related articles

Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi).

Matheny PB, Wang Z, Binder M, Curtis JM, Lim YW, Nilsson RH, Hughes KW, Hofstetter V, Ammirati JF, Schoch CL, Langer E, Langer G, McLaughlin DJ, Wilson AW, Frøslev T, Ge ZW, Kerrigan RW, Slot JC, Yang ZL, Baroni TJ, Fischer M, Hosaka K, Matsuura K, Seidl MT, Vauras J, Hibbett DS.

Mol Phylogenet Evol. 2007 May;43(2):430-51. Epub 2006 Sep 23.PMID: 17081773 [PubMed - indexed for MEDLINE]Related articles

A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): identification of localized incongruence using a combinational bootstrap approach.

Sung GH, Sung JM, Hywel-Jones NL, Spatafora JW.

Mol Phylogenet Evol. 2007 Sep;44(3):1204-23. Epub 2007 Mar 27.PMID: 17555990 [PubMed - indexed for MEDLINE]Related articles

A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis.

Fitzpatrick DA, Logue ME, Stajich JE, Butler G.

BMC Evol Biol. 2006 Nov 22;6:99.PMID: 17121679 [PubMed - indexed for MEDLINE]Related articlesFree article

Congruent evidence from alpha-tubulin and beta-tubulin gene phylogenies for a zygomycete origin of microsporidia.

Keeling PJ.

Fungal Genet Biol. 2003 Apr;38(3):298-309.PMID: 12684019 [PubMed - indexed for MEDLINE]Related articles

The phylogeny of the Hyphochytriomycota as deduced from ribosomal RNA sequences of Hyphochytrium catenoides.

Van der Auwera G, De Baere R, Van de Peer Y, De Rijk P, Van den Broeck I, De Wachter R.

Mol Biol Evol. 1995 Jul;12(4):671-8.PMID: 7659021 [PubMed - indexed for MEDLINE]Related articles