PubMed

Analytical model of peptide mass cluster centres with applications.

Wolski WE, Farrow M, Emde AK, Lehrach H, Lalowski M, Reinert K.

Proteome Sci. 2006 Sep 23;4:18.PMID: 16995952 [PubMed]Related articlesFree article

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis.

Tabb DL, Fernando CG, Chambers MC.

J Proteome Res. 2007 Feb;6(2):654-61.PMID: 17269722 [PubMed - indexed for MEDLINE]Related articlesFree article

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites.

Hummel J, Niemann M, Wienkoop S, Schulze W, Steinhauser D, Selbig J, Walther D, Weckwerth W.

BMC Bioinformatics. 2007 Jun 23;8:216.PMID: 17587460 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of missed cleavage sites in tryptic peptides aids protein identification in proteomics.

Siepen JA, Keevil EJ, Knight D, Hubbard SJ.

J Proteome Res. 2007 Jan;6(1):399-408.PMID: 17203985 [PubMed - indexed for MEDLINE]Related articlesFree article

A new probabilistic database search algorithm for ETD spectra.

Sadygov RG, Good DM, Swaney DL, Coon JJ.

J Proteome Res. 2009 Jun;8(6):3198-205.PMID: 19354237 [PubMed - indexed for MEDLINE]Related articlesFree article

SAMPI: protein identification with mass spectra alignments.

Kaltenbach HM, Wilke A, Böcker S.

BMC Bioinformatics. 2007 Mar 26;8:102.PMID: 17386090 [PubMed - indexed for MEDLINE]Related articlesFree article

Speeding up tandem mass spectrometry database search: metric embeddings and fast near neighbor search.

Dutta D, Chen T.

Bioinformatics. 2007 Mar 1;23(5):612-8. Epub 2007 Jan 19.PMID: 17237061 [PubMed - indexed for MEDLINE]Related articlesFree article

Evaluation of the influence of amino acid composition on the propensity for collision-induced dissociation of model peptides using molecular dynamics simulations.

Cannon WR, Taasevigen D, Baxter DJ, Laskin J.

J Am Soc Mass Spectrom. 2007 Sep;18(9):1625-37. Epub 2007 Jun 20.PMID: 17651984 [PubMed - indexed for MEDLINE]Related articles

De novo peptide sequencing using ion peak intensity and amino acid cleavage intensity ratio.

Kanazawa M, Anyoji H, Ogiwara A, Nagashima U.

Bioinformatics. 2007 May 1;23(9):1068-72. Epub 2007 Mar 6.PMID: 17341498 [PubMed - indexed for MEDLINE]Related articlesFree article

Tandem mass spectrometry data quality assessment by self-convolution.

Choo KW, Tham WM.

BMC Bioinformatics. 2007 Sep 20;8:352.PMID: 17880728 [PubMed - indexed for MEDLINE]Related articlesFree article

CLUSS: clustering of protein sequences based on a new similarity measure.

Kelil A, Wang S, Brzezinski R, Fleury A.

BMC Bioinformatics. 2007 Aug 4;8:286.PMID: 17683581 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of complex protein mixtures with improved sequence coverage using (CE-MS/MS)n.

Garza S, Moini M.

Anal Chem. 2006 Oct 15;78(20):7309-16.PMID: 17037937 [PubMed - indexed for MEDLINE]Related articles

Prediction of peptides observable by mass spectrometry applied at the experimental set level.

Sanders WS, Bridges SM, McCarthy FM, Nanduri B, Burgess SC.

BMC Bioinformatics. 2007 Nov 1;8 Suppl 7:S23.PMID: 18047723 [PubMed - indexed for MEDLINE]Related articlesFree article

Probability model for assessing proteins assembled from peptide sequences inferred from tandem mass spectrometry data.

Feng J, Naiman DQ, Cooper B.

Anal Chem. 2007 May 15;79(10):3901-11. Epub 2007 Apr 19.PMID: 17441689 [PubMed - indexed for MEDLINE]Related articles

HMMatch: peptide identification by spectral matching of tandem mass spectra using hidden Markov models.

Wu X, Tseng CW, Edwards N.

J Comput Biol. 2007 Oct;14(8):1025-43.PMID: 17985986 [PubMed - indexed for MEDLINE]Related articles

PARPST: a PARallel algorithm to find peptide sequence tags.

Brunetti S, Lodi E, Mori E, Stella M.

BMC Bioinformatics. 2008 Apr 25;9 Suppl 4:S11.PMID: 18460172 [PubMed - indexed for MEDLINE]Related articlesFree article

Design and implementation of probability-based scoring function for peptide mass fingerprinting protein identification.

Song Z, Chen L, Zhang C, Xu D.

Conf Proc IEEE Eng Med Biol Soc. 2006;1:4556-9.PMID: 17946250 [PubMed - indexed for MEDLINE]Related articles

A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments.

Robinson MD, De Souza DP, Keen WW, Saunders EC, McConville MJ, Speed TP, Likić VA.

BMC Bioinformatics. 2007 Oct 29;8:419.PMID: 17963529 [PubMed - indexed for MEDLINE]Related articlesFree article

A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data.

Xu H, Freitas MA.

BMC Bioinformatics. 2007 Apr 20;8:133.PMID: 17448237 [PubMed - indexed for MEDLINE]Related articlesFree article

Isotopic peak intensity ratio based algorithm for determination of isotopic clusters and monoisotopic masses of polypeptides from high-resolution mass spectrometric data.

Park K, Yoon JY, Lee S, Paek E, Park H, Jung HJ, Lee SW.

Anal Chem. 2008 Oct 1;80(19):7294-303. Epub 2008 Aug 28.PMID: 18754627 [PubMed - indexed for MEDLINE]Related articles