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Results: 1 to 20 of 108

1.

A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons.

Allen JE, Salzberg SL.

Algorithms Mol Biol. 2006 Aug 25;1:14.PMID: 16934144 [PubMed]Related articlesFree article

2.

Plant Gene and Alternatively Spliced Variant Annotator. A plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species expressed sequence tag conservation from seven plant species.

Chen FC, Wang SS, Chaw SM, Huang YT, Chuang TJ.

Plant Physiol. 2007 Mar;143(3):1086-95. Epub 2007 Jan 12.PMID: 17220363 [PubMed - indexed for MEDLINE]Related articlesFree article

3.

A computational and experimental approach toward a priori identification of alternatively spliced exons.

Philipps DL, Park JW, Graveley BR.

RNA. 2004 Dec;10(12):1838-44. Epub 2004 Nov 3.PMID: 15525709 [PubMed - indexed for MEDLINE]Related articlesFree article

4.

RASE: recognition of alternatively spliced exons in C.elegans.

Rätsch G, Sonnenburg S, Schölkopf B.

Bioinformatics. 2005 Jun;21 Suppl 1:i369-77.PMID: 15961480 [PubMed - indexed for MEDLINE]Related articlesFree article

5.

Prediction of alternatively skipped exons and splicing enhancers from exon junction arrays.

Kechris K, Yang YH, Yeh RF.

BMC Genomics. 2008 Nov 20;9:551.PMID: 19021909 [PubMed - indexed for MEDLINE]Related articlesFree article

6.

Sex-specific splicing in Drosophila: widespread occurrence, tissue specificity and evolutionary conservation.

Telonis-Scott M, Kopp A, Wayne ML, Nuzhdin SV, McIntyre LM.

Genetics. 2009 Feb;181(2):421-34. Epub 2008 Nov 17.PMID: 19015538 [PubMed - indexed for MEDLINE]Related articlesFree article

7.

Recognition of unknown conserved alternatively spliced exons.

Ohler U, Shomron N, Burge CB.

PLoS Comput Biol. 2005 Jul;1(2):113-22. Epub 2005 Jul 8.PMID: 16110330 [PubMed]Related articlesFree article

8.

Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.

Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y.

BMC Genomics. 2006 Dec 27;7:325.PMID: 17192196 [PubMed - indexed for MEDLINE]Related articlesFree article

9.

Assessing the number of ancestral alternatively spliced exons in the human genome.

Sorek R, Dror G, Shamir R.

BMC Genomics. 2006 Oct 24;7:273.PMID: 17062157 [PubMed - indexed for MEDLINE]Related articlesFree article

10.

Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array.

Hang X, Li P, Li Z, Qu W, Yu Y, Li H, Shen Z, Zheng H, Gao Y, Wu Y, Deng M, Sun Z, Zhang C.

BMC Genomics. 2009 Mar 25;10:126.PMID: 19320972 [PubMed - indexed for MEDLINE]Related articlesFree article

11.

Using mRNAs lengths to accurately predict the alternatively spliced gene products in Caenorhabditis elegans.

Agrawal R, Stormo GD.

Bioinformatics. 2006 May 15;22(10):1239-44. Epub 2006 Apr 4.PMID: 16595562 [PubMed - indexed for MEDLINE]Related articlesFree article

12.

ASD: a bioinformatics resource on alternative splicing.

Stamm S, Riethoven JJ, Le Texier V, Gopalakrishnan C, Kumanduri V, Tang Y, Barbosa-Morais NL, Thanaraj TA.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D46-55.PMID: 16381912 [PubMed - indexed for MEDLINE]Related articlesFree article

13.

Comparative analysis of amino acid usage and protein length distribution between alternatively and non-alternatively spliced genes across six eukaryotic genomes.

Zhuang Y, Ma F, Li-Ling J, Xu X, Li Y.

Mol Biol Evol. 2003 Dec;20(12):1978-85. Epub 2003 Jul 28.PMID: 12885959 [PubMed - indexed for MEDLINE]Related articlesFree article

14.

Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts.

Flicek P, Brent MR.

Genome Biol. 2006;7 Suppl 1:S8.1-9. Epub 2006 Aug 7.PMID: 16925842 [PubMed - indexed for MEDLINE]Related articlesFree article

15.

Identification of unannotated exons of low abundance transcripts in Drosophila melanogaster and cloning of a new serine protease gene upregulated upon injury.

Maia RM, Valente V, Cunha MA, Sousa JF, Araujo DD, Silva WA Jr, Zago MA, Dias-Neto E, Souza SJ, Simpson AJ, Monesi N, Ramos RG, Espreafico EM, Paçó-Larson ML.

BMC Genomics. 2007 Jul 24;8:249.PMID: 17650329 [PubMed - indexed for MEDLINE]Related articlesFree article

16.

Large introns in relation to alternative splicing and gene evolution: a case study of Drosophila bruno-3.

Kandul NP, Noor MA.

BMC Genet. 2009 Oct 19;10:67.PMID: 19840385 [PubMed - indexed for MEDLINE]Related articlesFree article

17.

Identifying differential exon splicing using linear models and correlation coefficients.

Shah SH, Pallas JA.

BMC Bioinformatics. 2009 Jan 20;10:26.PMID: 19154578 [PubMed - indexed for MEDLINE]Related articlesFree article

18.

Self-alignments to detect mutually exclusive exon usage.

Stephan M, Möller F, Wiehe T, Kleffe J.

In Silico Biol. 2007;7(6):613-21.PMID: 18467774 [PubMed - indexed for MEDLINE]Related articles

19.

Non-EST-based prediction of novel alternatively spliced cassette exons with cell signaling function in Caenorhabditis elegans and human.

Leparc GG, Mitra RD.

Nucleic Acids Res. 2007;35(10):3192-202. Epub 2007 Apr 22.PMID: 17452356 [PubMed - indexed for MEDLINE]Related articlesFree article

20.

Identify alternative splicing events based on position-specific evolutionary conservation.

Chen L, Zheng S.

PLoS One. 2008 Jul 30;3(7):e2806.PMID: 18665247 [PubMed - indexed for MEDLINE]Related articlesFree article

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