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    Results: 1 to 20 of 101

    1.

    JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions.

    Allen JE, Majoros WH, Pertea M, Salzberg SL.

    Genome Biol. 2006;7 Suppl 1:S9.1-13. Epub 2006 Aug 7.

    PMID:
    16925843
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    GENCODE: producing a reference annotation for ENCODE.

    Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R.

    Genome Biol. 2006;7 Suppl 1:S4.1-9. Epub 2006 Aug 7.

    PMID:
    16925838
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome.

    Stanke M, Tzvetkova A, Morgenstern B.

    Genome Biol. 2006;7 Suppl 1:S11.1-8. Epub 2006 Aug 7.

    PMID:
    16925833
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA.

    Djebali S, Delaplace F, Roest Crollius H.

    Genome Biol. 2006;7 Suppl 1:S7.1-10. Epub 2006 Aug 7.

    PMID:
    16925841
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    EGASP: the human ENCODE Genome Annotation Assessment Project.

    Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG.

    Genome Biol. 2006;7 Suppl 1:S2.1-31. Epub 2006 Aug 7. Review.

    PMID:
    16925836
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    JIGSAW: integration of multiple sources of evidence for gene prediction.

    Allen JE, Salzberg SL.

    Bioinformatics. 2005 Sep 15;21(18):3596-603. Epub 2005 Aug 2.

    PMID:
    16076884
    [PubMed - indexed for MEDLINE]
    Free Article
    7.

    Pairagon+N-SCAN_EST: a model-based gene annotation pipeline.

    Arumugam M, Wei C, Brown RH, Brent MR.

    Genome Biol. 2006;7 Suppl 1:S5.1-10. Epub 2006 Aug 7.

    PMID:
    16925839
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Using ESTs to improve the accuracy of de novo gene prediction.

    Wei C, Brent MR.

    BMC Bioinformatics. 2006 Jul 3;7:327.

    PMID:
    16817966
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.

    Bajic VB, Brent MR, Brown RH, Frankish A, Harrow J, Ohler U, Solovyev VV, Tan SL.

    Genome Biol. 2006;7 Suppl 1:S3.1-13. Epub 2006 Aug 7. Review.

    PMID:
    16925837
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Begin at the beginning: predicting genes with 5' UTRs.

    Brown RH, Gross SS, Brent MR.

    Genome Res. 2005 May;15(5):742-7.

    PMID:
    15867435
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    AceView: a comprehensive cDNA-supported gene and transcripts annotation.

    Thierry-Mieg D, Thierry-Mieg J.

    Genome Biol. 2006;7 Suppl 1:S12.1-14. Epub 2006 Aug 7.

    PMID:
    16925834
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Automatic annotation of eukaryotic genes, pseudogenes and promoters.

    Solovyev V, Kosarev P, Seledsov I, Vorobyev D.

    Genome Biol. 2006;7 Suppl 1:S10.1-12. Epub 2006 Aug 7.

    PMID:
    16925832
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Bases and spaces: resources on the web for accessing the draft human genome.

    Semple C.

    Genome Biol. 2000;1(4):REVIEWS2001. Epub 2000 Oct 16.

    PMID:
    11178254
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Competition boosts bid to find human genes.

    Abbott A.

    Nature. 2005 May 12;435(7039):134. No abstract available.

    PMID:
    15889055
    [PubMed - indexed for MEDLINE]
    15.

    Ab initio identification of putative human transcription factor binding sites by comparative genomics.

    Corà D, Herrmann C, Dieterich C, Di Cunto F, Provero P, Caselle M.

    BMC Bioinformatics. 2005 May 2;6:110.

    PMID:
    15865625
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Vertebrate gene finding from multiple-species alignments using a two-level strategy.

    Carter D, Durbin R.

    Genome Biol. 2006;7 Suppl 1:S6.1-12. Epub 2006 Aug 7.

    PMID:
    16925840
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Ab initio gene finding in Drosophila genomic DNA.

    Salamov AA, Solovyev VV.

    Genome Res. 2000 Apr;10(4):516-22.

    PMID:
    10779491
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Gene structure prediction and alternative splicing analysis using genomically aligned ESTs.

    Kan Z, Rouchka EC, Gish WR, States DJ.

    Genome Res. 2001 May;11(5):889-900.

    PMID:
    11337482
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    A general pipeline for the development of anchor markers for comparative genomics in plants.

    Fredslund J, Madsen LH, Hougaard BK, Nielsen AM, Bertioli D, Sandal N, Stougaard J, Schauser L.

    BMC Genomics. 2006 Aug 14;7:207.

    PMID:
    16907970
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    EGASP: Introduction.

    Reese MG, Guigó R.

    Genome Biol. 2006;7 Suppl 1:S1.1-3. Epub 2006 Aug 7. No abstract available.

    PMID:
    16925831
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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