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    Results: 1 to 20 of 207

    1.

    GENCODE: producing a reference annotation for ENCODE.

    Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R.

    Genome Biol. 2006;7 Suppl 1:S4.1-9. Epub 2006 Aug 7.

    PMID:
    16925838
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    AceView: a comprehensive cDNA-supported gene and transcripts annotation.

    Thierry-Mieg D, Thierry-Mieg J.

    Genome Biol. 2006;7 Suppl 1:S12.1-14. Epub 2006 Aug 7.

    PMID:
    16925834
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    EGASP: the human ENCODE Genome Annotation Assessment Project.

    Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG.

    Genome Biol. 2006;7 Suppl 1:S2.1-31. Epub 2006 Aug 7. Review.

    PMID:
    16925836
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Automatic annotation of eukaryotic genes, pseudogenes and promoters.

    Solovyev V, Kosarev P, Seledsov I, Vorobyev D.

    Genome Biol. 2006;7 Suppl 1:S10.1-12. Epub 2006 Aug 7.

    PMID:
    16925832
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Pairagon+N-SCAN_EST: a model-based gene annotation pipeline.

    Arumugam M, Wei C, Brown RH, Brent MR.

    Genome Biol. 2006;7 Suppl 1:S5.1-10. Epub 2006 Aug 7.

    PMID:
    16925839
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome.

    Amid C, Rehaume LM, Brown KL, Gilbert JG, Dougan G, Hancock RE, Harrow JL.

    BMC Genomics. 2009 Dec 15;10:606.

    PMID:
    20003482
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts.

    Flicek P, Brent MR.

    Genome Biol. 2006;7 Suppl 1:S8.1-9. Epub 2006 Aug 7.

    PMID:
    16925842
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.

    Bajic VB, Brent MR, Brown RH, Frankish A, Harrow J, Ohler U, Solovyev VV, Tan SL.

    Genome Biol. 2006;7 Suppl 1:S3.1-13. Epub 2006 Aug 7. Review.

    PMID:
    16925837
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    [Correction of five different types of errors of model REFSEQs appeared in NCBI human gene database only by using two novel human genes C17orf32 and ZNF362].

    Zhang DL, Li YD, Ji L.

    Yi Chuan Xue Bao. 2004 Apr;31(4):325-34. Chinese.

    PMID:
    15487498
    [PubMed - indexed for MEDLINE]
    11.

    Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA.

    Djebali S, Delaplace F, Roest Crollius H.

    Genome Biol. 2006;7 Suppl 1:S7.1-10. Epub 2006 Aug 7.

    PMID:
    16925841
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    A computational approach for identifying pseudogenes in the ENCODE regions.

    Zheng D, Gerstein MB.

    Genome Biol. 2006;7 Suppl 1:S13.1-10. Epub 2006 Aug 7.

    PMID:
    16925835
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags.

    Shin H, Hirst M, Bainbridge MN, Magrini V, Mardis E, Moerman DG, Marra MA, Baillie DL, Jones SJ.

    BMC Biol. 2008 Jul 8;6:30.

    PMID:
    18611272
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Systematic identification of pseudogenes through whole genome expression evidence profiling.

    Yao A, Charlab R, Li P.

    Nucleic Acids Res. 2006;34(16):4477-85. Epub 2006 Aug 31.

    PMID:
    16945953
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome.

    Christoffels A, Bartfai R, Srinivasan H, Komen H, Orban L.

    BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S2.

    PMID:
    17254304
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Experimental validation of novel genes predicted in the un-annotated regions of the Arabidopsis genome.

    Moskal WA Jr, Wu HC, Underwood BA, Wang W, Town CD, Xiao Y.

    BMC Genomics. 2007 Jan 17;8:18.

    PMID:
    17229318
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    CAFTAN: a tool for fast mapping, and quality assessment of cDNAs.

    del Val C, Kuryshev VY, Glatting KH, Ernst P, Hotz-Wagenblatt A, Poustka A, Suhai S, Wiemann S.

    BMC Bioinformatics. 2006 Oct 25;7:473.

    PMID:
    17064411
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping.

    Hirosawa M, Nagase T, Murahashi Y, Kikuno R, Ohara O.

    DNA Res. 2001 Feb 28;8(1):1-9.

    PMID:
    11258795
    [PubMed - indexed for MEDLINE]
    Free Article
    19.

    The GENCODE exome: sequencing the complete human exome.

    Coffey AJ, Kokocinski F, Calafato MS, Scott CE, Palta P, Drury E, Joyce CJ, Leproust EM, Harrow J, Hunt S, Lehesjoki AE, Turner DJ, Hubbard TJ, Palotie A.

    Eur J Hum Genet. 2011 Jul;19(7):827-31. doi: 10.1038/ejhg.2011.28. Epub 2011 Mar 2.

    PMID:
    21364695
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Genome annotation of a 1.5 Mb region of human chromosome 6q23 encompassing a quantitative trait locus for fetal hemoglobin expression in adults.

    Close J, Game L, Clark B, Bergounioux J, Gerovassili A, Thein SL.

    BMC Genomics. 2004 May 31;5(1):33.

    PMID:
    15169551
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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