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    Results: 1 to 20 of 353

    1.

    EGASP: the human ENCODE Genome Annotation Assessment Project.

    Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG.

    Genome Biol. 2006;7 Suppl 1:S2.1-31. Epub 2006 Aug 7. Review.

    PMID:
    16925836
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    GENCODE: producing a reference annotation for ENCODE.

    Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R.

    Genome Biol. 2006;7 Suppl 1:S4.1-9. Epub 2006 Aug 7.

    PMID:
    16925838
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    AceView: a comprehensive cDNA-supported gene and transcripts annotation.

    Thierry-Mieg D, Thierry-Mieg J.

    Genome Biol. 2006;7 Suppl 1:S12.1-14. Epub 2006 Aug 7.

    PMID:
    16925834
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.

    Bajic VB, Brent MR, Brown RH, Frankish A, Harrow J, Ohler U, Solovyev VV, Tan SL.

    Genome Biol. 2006;7 Suppl 1:S3.1-13. Epub 2006 Aug 7. Review.

    PMID:
    16925837
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Genome annotation assessment in Drosophila melanogaster.

    Reese MG, Hartzell G, Harris NL, Ohler U, Abril JF, Lewis SE.

    Genome Res. 2000 Apr;10(4):483-501.

    PMID:
    10779488
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts.

    Flicek P, Brent MR.

    Genome Biol. 2006;7 Suppl 1:S8.1-9. Epub 2006 Aug 7.

    PMID:
    16925842
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome.

    Stanke M, Tzvetkova A, Morgenstern B.

    Genome Biol. 2006;7 Suppl 1:S11.1-8. Epub 2006 Aug 7.

    PMID:
    16925833
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Automatic annotation of eukaryotic genes, pseudogenes and promoters.

    Solovyev V, Kosarev P, Seledsov I, Vorobyev D.

    Genome Biol. 2006;7 Suppl 1:S10.1-12. Epub 2006 Aug 7.

    PMID:
    16925832
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA.

    Djebali S, Delaplace F, Roest Crollius H.

    Genome Biol. 2006;7 Suppl 1:S7.1-10. Epub 2006 Aug 7.

    PMID:
    16925841
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    nGASP--the nematode genome annotation assessment project.

    Coghlan A, Fiedler TJ, McKay SJ, Flicek P, Harris TW, Blasiar D; nGASP Consortium, Stein LD.

    BMC Bioinformatics. 2008 Dec 19;9:549.

    PMID:
    19099578
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Ab initio gene finding in Drosophila genomic DNA.

    Salamov AA, Solovyev VV.

    Genome Res. 2000 Apr;10(4):516-22.

    PMID:
    10779491
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs.

    Takeda J, Suzuki Y, Nakao M, Barrero RA, Koyanagi KO, Jin L, Motono C, Hata H, Isogai T, Nagai K, Otsuki T, Kuryshev V, Shionyu M, Yura K, Go M, Thierry-Mieg J, Thierry-Mieg D, Wiemann S, Nomura N, Sugano S, Gojobori T, Imanishi T.

    Nucleic Acids Res. 2006;34(14):3917-28. Epub 2006 Aug 12.

    PMID:
    16914452
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Pairagon+N-SCAN_EST: a model-based gene annotation pipeline.

    Arumugam M, Wei C, Brown RH, Brent MR.

    Genome Biol. 2006;7 Suppl 1:S5.1-10. Epub 2006 Aug 7.

    PMID:
    16925839
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Integrating alternative splicing detection into gene prediction.

    Foissac S, Schiex T.

    BMC Bioinformatics. 2005 Feb 10;6:25.

    PMID:
    15705189
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration.

    Teber ET, Crawford E, Bolton KB, Van Dyk D, Schofield PR, Kapoor V, Church WB.

    BMC Bioinformatics. 2006 Jan 23;7:33.

    PMID:
    16426464
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.

    Milanesi L, Petrillo M, Sepe L, Boccia A, D'Agostino N, Passamano M, Di Nardo S, Tasco G, Casadio R, Paolella G.

    BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S20.

    PMID:
    16351747
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    [Correction of five different types of errors of model REFSEQs appeared in NCBI human gene database only by using two novel human genes C17orf32 and ZNF362].

    Zhang DL, Li YD, Ji L.

    Yi Chuan Xue Bao. 2004 Apr;31(4):325-34. Chinese.

    PMID:
    15487498
    [PubMed - indexed for MEDLINE]
    19.

    Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

    Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, Smith CD, Tupy JL, Whitfied EJ, Bayraktaroglu L, Berman BP, Bettencourt BR, Celniker SE, de Grey AD, Drysdale RA, Harris NL, Richter J, Russo S, Schroeder AJ, Shu SQ, Stapleton M, Yamada C, Ashburner M, Gelbart WM, Rubin GM, Lewis SE.

    Genome Biol. 2002;3(12):RESEARCH0083. Epub 2002 Dec 31. Review.

    PMID:
    12537572
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    A procedure for assessing GO annotation consistency.

    Dolan ME, Ni L, Camon E, Blake JA.

    Bioinformatics. 2005 Jun;21 Suppl 1:i136-43.

    PMID:
    15961450
    [PubMed - indexed for MEDLINE]
    Free Article

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