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    Results: 1 to 20 of 240

    1.

    AceView: a comprehensive cDNA-supported gene and transcripts annotation.

    Thierry-Mieg D, Thierry-Mieg J.

    Genome Biol. 2006;7 Suppl 1:S12.1-14. Epub 2006 Aug 7.

    PMID:
    16925834
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    GENCODE: producing a reference annotation for ENCODE.

    Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R.

    Genome Biol. 2006;7 Suppl 1:S4.1-9. Epub 2006 Aug 7.

    PMID:
    16925838
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    EGASP: the human ENCODE Genome Annotation Assessment Project.

    Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG.

    Genome Biol. 2006;7 Suppl 1:S2.1-31. Epub 2006 Aug 7. Review.

    PMID:
    16925836
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Automatic annotation of eukaryotic genes, pseudogenes and promoters.

    Solovyev V, Kosarev P, Seledsov I, Vorobyev D.

    Genome Biol. 2006;7 Suppl 1:S10.1-12. Epub 2006 Aug 7.

    PMID:
    16925832
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.

    Bajic VB, Brent MR, Brown RH, Frankish A, Harrow J, Ohler U, Solovyev VV, Tan SL.

    Genome Biol. 2006;7 Suppl 1:S3.1-13. Epub 2006 Aug 7. Review.

    PMID:
    16925837
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Pairagon+N-SCAN_EST: a model-based gene annotation pipeline.

    Arumugam M, Wei C, Brown RH, Brent MR.

    Genome Biol. 2006;7 Suppl 1:S5.1-10. Epub 2006 Aug 7.

    PMID:
    16925839
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Integrating alternative splicing detection into gene prediction.

    Foissac S, Schiex T.

    BMC Bioinformatics. 2005 Feb 10;6:25.

    PMID:
    15705189
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration.

    Teber ET, Crawford E, Bolton KB, Van Dyk D, Schofield PR, Kapoor V, Church WB.

    BMC Bioinformatics. 2006 Jan 23;7:33.

    PMID:
    16426464
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts.

    Flicek P, Brent MR.

    Genome Biol. 2006;7 Suppl 1:S8.1-9. Epub 2006 Aug 7.

    PMID:
    16925842
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs.

    Takeda J, Suzuki Y, Nakao M, Barrero RA, Koyanagi KO, Jin L, Motono C, Hata H, Isogai T, Nagai K, Otsuki T, Kuryshev V, Shionyu M, Yura K, Go M, Thierry-Mieg J, Thierry-Mieg D, Wiemann S, Nomura N, Sugano S, Gojobori T, Imanishi T.

    Nucleic Acids Res. 2006;34(14):3917-28. Epub 2006 Aug 12.

    PMID:
    16914452
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Identify alternative splicing events based on position-specific evolutionary conservation.

    Chen L, Zheng S.

    PLoS One. 2008 Jul 30;3(7):e2806.

    PMID:
    18665247
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    The genome browser at UCSC for locating genes, and much more!

    Bina M.

    Mol Biotechnol. 2008 Mar;38(3):269-75. Epub 2007 Dec 4. Review.

    PMID:
    18058261
    [PubMed - indexed for MEDLINE]
    13.

    Vertebrate gene finding from multiple-species alignments using a two-level strategy.

    Carter D, Durbin R.

    Genome Biol. 2006;7 Suppl 1:S6.1-12. Epub 2006 Aug 7.

    PMID:
    16925840
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA.

    Djebali S, Delaplace F, Roest Crollius H.

    Genome Biol. 2006;7 Suppl 1:S7.1-10. Epub 2006 Aug 7.

    PMID:
    16925841
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.

    Milanesi L, Petrillo M, Sepe L, Boccia A, D'Agostino N, Passamano M, Di Nardo S, Tasco G, Casadio R, Paolella G.

    BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S20.

    PMID:
    16351747
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing.

    Mane SP, Evans C, Cooper KL, Crasta OR, Folkerts O, Hutchison SK, Harkins TT, Thierry-Mieg D, Thierry-Mieg J, Jensen RV.

    BMC Genomics. 2009 Jun 12;10:264.

    PMID:
    19523228
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    CAFTAN: a tool for fast mapping, and quality assessment of cDNAs.

    del Val C, Kuryshev VY, Glatting KH, Ernst P, Hotz-Wagenblatt A, Poustka A, Suhai S, Wiemann S.

    BMC Bioinformatics. 2006 Oct 25;7:473.

    PMID:
    17064411
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB.

    Yamasaki C, Kawashima H, Todokoro F, Imamizu Y, Ogawa M, Tanino M, Itoh T, Gojobori T, Imanishi T.

    Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W345-9.

    PMID:
    16845023
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.

    Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y.

    BMC Genomics. 2006 Dec 27;7:325.

    PMID:
    17192196
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome.

    Athanasiadis A, Rich A, Maas S.

    PLoS Biol. 2004 Dec;2(12):e391. Epub 2004 Nov 9.

    PMID:
    15534692
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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