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    Results: 1 to 20 of 156

    1.

    Analysis of promoter regions of co-expressed genes identified by microarray analysis.

    Veerla S, Höglund M.

    BMC Bioinformatics. 2006 Aug 17;7:384.PMID: 16916454 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Clustering and re-clustering for pattern discovery in gene expression data.

    Ma PC, Chan KC, Chiu DK.

    J Bioinform Comput Biol. 2005 Apr;3(2):281-301.PMID: 15852506 [PubMed - indexed for MEDLINE]Related articles

    3.

    Cluster analysis and promoter modelling as bioinformatics tools for the identification of target genes from expression array data.

    Werner T.

    Pharmacogenomics. 2001 Feb;2(1):25-36. Review.PMID: 11258194 [PubMed - indexed for MEDLINE]Related articles

    4.

    Target gene identification from expression array data by promoter analysis.

    Werner T.

    Biomol Eng. 2001 Mar;17(3):87-94. Review.PMID: 11222983 [PubMed - indexed for MEDLINE]Related articles

    5.

    Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites.

    Qin ZS, McCue LA, Thompson W, Mayerhofer L, Lawrence CE, Liu JS.

    Nat Biotechnol. 2003 Apr;21(4):435-9. Epub 2003 Mar 10.PMID: 12627170 [PubMed - indexed for MEDLINE]Related articles

    6.

    Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes.

    Chou JW, Zhou T, Kaufmann WK, Paules RS, Bushel PR.

    BMC Bioinformatics. 2007 Nov 2;8:427.PMID: 17980031 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Knowledge-guided multi-scale independent component analysis for biomarker identification.

    Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R.

    BMC Bioinformatics. 2008 Oct 6;9:416.PMID: 18837990 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Comparing expression profiles of genes with similar promoter regions.

    Park PJ, Butte AJ, Kohane IS.

    Bioinformatics. 2002 Dec;18(12):1576-84.PMID: 12490441 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    CoPub Mapper: mining MEDLINE based on search term co-publication.

    Alako BT, Veldhoven A, van Baal S, Jelier R, Verhoeven S, Rullmann T, Polman J, Jenster G.

    BMC Bioinformatics. 2005 Mar 11;6:51.PMID: 15760478 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Motif discovery in promoters of genes co-localized and co-expressed during myeloid cells differentiation.

    Coppe A, Ferrari F, Bisognin A, Danieli GA, Ferrari S, Bicciato S, Bortoluzzi S.

    Nucleic Acids Res. 2009 Feb;37(2):533-49. Epub 2008 Dec 5.PMID: 19059999 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Bioinformatic identification of novel putative photoreceptor specific cis-elements.

    Danko CG, McIlvain VA, Qin M, Knox BE, Pertsov AM.

    BMC Bioinformatics. 2007 Oct 22;8:407.PMID: 17953763 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression.

    Murakami K, Kojima T, Sakaki Y.

    BMC Genomics. 2004 Feb 23;5(1):16.PMID: 15053842 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Combining Pareto-optimal clusters using supervised learning for identifying co-expressed genes.

    Maulik U, Mukhopadhyay A, Bandyopadhyay S.

    BMC Bioinformatics. 2009 Jan 20;10:27.PMID: 19154590 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Genome-wide analysis of factors regulating gene expression in liver.

    Teufel A, Weinmann A, Krupp M, Budinger M, Galle PR.

    Gene. 2007 Mar 15;389(2):114-21. Epub 2006 Nov 7.PMID: 17174484 [PubMed - indexed for MEDLINE]Related articles

    15.

    An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data.

    Ruan J, Deng Y, Perkins EJ, Zhang W.

    BMC Genomics. 2009 Jul 7;10 Suppl 1:S8.PMID: 19594885 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes.

    Sebestyén E, Nagy T, Suhai S, Barta E.

    BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S6.PMID: 19534755 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    FactorY, a bioinformatic resource for genome-wide promoter analysis.

    Guruceaga E, Segura V, Corrales FJ, Rubio A.

    Comput Biol Med. 2009 Apr;39(4):385-7. Epub 2009 Mar 9.PMID: 19272592 [PubMed - indexed for MEDLINE]Related articles

    18.

    Meta-analysis of breast cancer microarray studies in conjunction with conserved cis-elements suggest patterns for coordinate regulation.

    Smith DD, Saetrom P, Snøve O Jr, Lundberg C, Rivas GE, Glackin C, Larson GP.

    BMC Bioinformatics. 2008 Jan 28;9:63.PMID: 18226260 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes.

    Datta S, Datta S.

    BMC Bioinformatics. 2006 Aug 31;7:397.PMID: 16945146 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Comprehensive annotation of bidirectional promoters identifies co-regulation among breast and ovarian cancer genes.

    Yang MQ, Koehly LM, Elnitski LL.

    PLoS Comput Biol. 2007 Apr 20;3(4):e72. Epub 2007 Mar 5.PMID: 17447839 [PubMed - indexed for MEDLINE]Related articlesFree article

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