PubMed

On the origin of microbial ORFans: quantifying the strength of the evidence for viral lateral transfer.

Yin Y, Fischer D.

BMC Evol Biol. 2006 Aug 16;6:63.PMID: 16914045 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification and investigation of ORFans in the viral world.

Yin Y, Fischer D.

BMC Genomics. 2008 Jan 19;9:24.PMID: 18205946 [PubMed - indexed for MEDLINE]Related articlesFree article

A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes.

Cortez D, Forterre P, Gribaldo S.

Genome Biol. 2009;10(6):R65. Epub 2009 Jun 16.PMID: 19531232 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of singleton ORFans in fully sequenced microbial genomes.

Siew N, Fischer D.

Proteins. 2003 Nov 1;53(2):241-51.PMID: 14517975 [PubMed - indexed for MEDLINE]Related articles

Structural biology sheds light on the puzzle of genomic ORFans.

Siew N, Fischer D.

J Mol Biol. 2004 Sep 10;342(2):369-73.PMID: 15327940 [PubMed - indexed for MEDLINE]Related articles

Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli.

Daubin V, Ochman H.

Genome Res. 2004 Jun;14(6):1036-42.PMID: 15173110 [PubMed - indexed for MEDLINE]Related articlesFree article

Structural and functional insights into Mimivirus ORFans.

Saini HK, Fischer D.

BMC Genomics. 2007 May 9;8:115.PMID: 17490476 [PubMed - indexed for MEDLINE]Related articlesFree article

The ORFanage: an ORFan database.

Siew N, Azaria Y, Fischer D.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D281-3.PMID: 14681413 [PubMed - indexed for MEDLINE]Related articlesFree article

Molecular evidence for the evolution of ichnoviruses from ascoviruses by symbiogenesis.

Bigot Y, Samain S, Augé-Gouillou C, Federici BA.

BMC Evol Biol. 2008 Sep 18;8:253.PMID: 18801176 [PubMed - indexed for MEDLINE]Related articlesFree article

Twenty thousand ORFan microbial protein families for the biologist?

Siew N, Fischer D.

Structure. 2003 Jan;11(1):7-9. Review.PMID: 12517334 [PubMed - indexed for MEDLINE]Related articles

Distributional profiles of homologous open reading frames among bacterial phyla: implications for vertical and lateral transmission.

Ragan MA, Charlebois RL.

Int J Syst Evol Microbiol. 2002 May;52(Pt 3):777-87.PMID: 12054238 [PubMed - indexed for MEDLINE]Related articlesFree article

The emergence and fate of horizontally acquired genes in Escherichia coli.

van Passel MW, Marri PR, Ochman H.

PLoS Comput Biol. 2008 Apr 11;4(4):e1000059.PMID: 18404206 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution and the complexity of bacteriophages.

Serwer P.

Virol J. 2007 Mar 13;4:30.PMID: 17355641 [PubMed - indexed for MEDLINE]Related articlesFree article

Ancient lateral gene transfer in the evolution of Bdellovibrio bacteriovorus.

Gophna U, Charlebois RL, Doolittle WF.

Trends Microbiol. 2006 Feb;14(2):64-9. Epub 2006 Jan 18.PMID: 16413191 [PubMed - indexed for MEDLINE]Related articles

Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses.

Monier A, Claverie JM, Ogata H.

BMC Genomics. 2007 Dec 10;8:456.PMID: 18070355 [PubMed - indexed for MEDLINE]Related articlesFree article

Are viruses driving microbial diversification and diversity?

Weinbauer MG, Rassoulzadegan F.

Environ Microbiol. 2004 Jan;6(1):1-11. Review.PMID: 14686936 [PubMed - indexed for MEDLINE]Related articles

Unravelling the ORFan Puzzle.

Siew N, Fischer D.

Comp Funct Genomics. 2003;4(4):432-41.PMID: 18629076 [PubMed - in process]Related articlesFree article

New insights into the evolutionary history of type 1 rhodopsins.

Ruiz-González MX, Marín I.

J Mol Evol. 2004 Mar;58(3):348-58.PMID: 15045490 [PubMed - indexed for MEDLINE]Related articles

Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life.

Prangishvili D, Garrett RA, Koonin EV.

Virus Res. 2006 Apr;117(1):52-67. Epub 2006 Feb 28. Review.PMID: 16503363 [PubMed - indexed for MEDLINE]Related articles

Convergent mechanisms of genome evolution of large and giant DNA viruses.

Filée J, Chandler M.

Res Microbiol. 2008 Jun;159(5):325-31. Epub 2008 May 10.PMID: 18572389 [PubMed - indexed for MEDLINE]Related articles