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Indications that "codon boundaries" are physico-chemically defined and that protein-folding information is contained in the redundant exon bases.

Biro JC.

Theor Biol Med Model. 2006 Aug 7;3:28.PMID: 16893453 [PubMed - indexed for MEDLINE]Related articlesFree article

Protein folding information in nucleic acids which is not present in the genetic code.

Biro JC.

Ann N Y Acad Sci. 2006 Dec;1091:399-411.PMID: 17341631 [PubMed - indexed for MEDLINE]Related articles

Nucleic acid chaperons: a theory of an RNA-assisted protein folding.

Biro JC.

Theor Biol Med Model. 2005 Sep 1;2:35.PMID: 16137324 [PubMed - indexed for MEDLINE]Related articlesFree article

A novel intra-molecular protein-protein interaction code based on partial complementary coding of co-locating amino acids.

Biro JC.

Med Hypotheses. 2006;66(1):137-42. Epub 2005 Sep 15.PMID: 16168570 [PubMed - indexed for MEDLINE]Related articles

Correlation between nucleotide composition and folding energy of coding sequences with special attention to wobble bases.

Biro JC.

Theor Biol Med Model. 2008 Jul 29;5:14.PMID: 18664268 [PubMed - indexed for MEDLINE]Related articlesFree article

Folding type specific secondary structure propensities of synonymous codons.

Gu W, Zhou T, Ma J, Sun X, Lu Z.

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Discovery of proteomic code with mRNA assisted protein folding.

Biro JC.

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The Proteomic Code: a molecular recognition code for proteins.

Biro JC.

Theor Biol Med Model. 2007 Nov 13;4:45.PMID: 17999762 [PubMed - indexed for MEDLINE]Related articlesFree article

Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles.

Yura K, Go M.

BMC Plant Biol. 2008 Jul 16;8:79.PMID: 18631376 [PubMed - indexed for MEDLINE]Related articlesFree article

Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs.

Meyer IM, Miklós I.

Nucleic Acids Res. 2005 Nov 7;33(19):6338-48. Print 2005.PMID: 16275783 [PubMed - indexed for MEDLINE]Related articlesFree article

Conflicting selection pressures on synonymous codon use in yeast suggest selection on mRNA secondary structures.

Stoletzki N.

BMC Evol Biol. 2008 Jul 31;8:224.PMID: 18671878 [PubMed - indexed for MEDLINE]Related articlesFree article

Amino acid size, charge, hydropathy indices and matrices for protein structure analysis.

Biro JC.

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Protein secondary structural types are differentially coded on messenger RNA.

Thanaraj TA, Argos P.

Protein Sci. 1996 Oct;5(10):1973-83.PMID: 8897597 [PubMed - indexed for MEDLINE]Related articlesFree article

Ribosome-mediated translational pause and protein domain organization.

Thanaraj TA, Argos P.

Protein Sci. 1996 Aug;5(8):1594-612.PMID: 8844849 [PubMed - indexed for MEDLINE]Related articlesFree article

Specific correlations between relative synonymous codon usage and protein secondary structure.

Oresic M, Shalloway D.

J Mol Biol. 1998 Aug 7;281(1):31-48.PMID: 9680473 [PubMed - indexed for MEDLINE]Related articles

Self complementarity in messenger RNA of collagen. I. Possible hairpin structures in regions coding for oligopeptides of glycine, proline (hydroxyproline) and alanine.

Bachra BN.

J Mol Evol. 1976 Aug 3;8(2):155-73.PMID: 966290 [PubMed - indexed for MEDLINE]Related articles

Constraints acting on the exon positions of the splice site sequences and local amino acid composition of the protein.

Fichant GA.

Hum Mol Genet. 1992 Jul;1(4):259-67.PMID: 1303196 [PubMed - indexed for MEDLINE]Related articles

SeqX: a tool to detect, analyze and visualize residue co-locations in protein and nucleic acid structures.

Biro JC, Fördös G.

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Second codon positions of genes and the secondary structures of proteins. Relationships and implications for the origin of the genetic code.

Chiusano ML, Alvarez-Valin F, Di Giulio M, D'Onofrio G, Ammirato G, Colonna G, Bernardi G.

Gene. 2000 Dec 30;261(1):63-9.PMID: 11164038 [PubMed - indexed for MEDLINE]Related articles

The relation between mRNA folding and protein structure.

Jia M, Luo L.

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