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    Results: 1 to 20 of 194

    1.

    Fine scale structural variants distinguish the genomes of Drosophila melanogaster and D. pseudoobscura.

    Macdonald SJ, Long AD.

    Genome Biol. 2006;7(7):R67.

    PMID:
    16872532
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.

    Bergman CM, Pfeiffer BD, Rincón-Limas DE, Hoskins RA, Gnirke A, Mungall CJ, Wang AM, Kronmiller B, Pacleb J, Park S, Stapleton M, Wan K, George RA, de Jong PJ, Botas J, Rubin GM, Celniker SE.

    Genome Biol. 2002;3(12):RESEARCH0086. Epub 2002 Dec 30.

    PMID:
    12537575
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.

    Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, Bussemaker HJ, van Batenburg MF, Howells SL, Scherer SE, Sodergren E, Matthews BB, Crosby MA, Schroeder AJ, Ortiz-Barrientos D, Rives CM, Metzker ML, Muzny DM, Scott G, Steffen D, Wheeler DA, Worley KC, Havlak P, Durbin KJ, Egan A, Gill R, Hume J, Morgan MB, Miner G, Hamilton C, Huang Y, Waldron L, Verduzco D, Clerc-Blankenburg KP, Dubchak I, Noor MA, Anderson W, White KP, Clark AG, Schaeffer SW, Gelbart W, Weinstock GM, Gibbs RA.

    Genome Res. 2005 Jan;15(1):1-18.

    PMID:
    15632085
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Repeat mediated gene duplication in the Drosophila pseudoobscura genome.

    Meisel RP.

    Gene. 2009 Jun 1;438(1-2):1-7. Epub 2009 Mar 9.

    PMID:
    19272434
    [PubMed - indexed for MEDLINE]
    5.

    Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes.

    Bhutkar A, Schaeffer SW, Russo SM, Xu M, Smith TF, Gelbart WM.

    Genetics. 2008 Jul;179(3):1657-80. Epub 2008 Jul 13.

    PMID:
    18622036
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Dynamics and function of intron sequences of the wingless gene during the evolution of the Drosophila genus.

    Costas J, Pereira PS, Vieira CP, Pinho S, Vieira J, Casares F.

    Evol Dev. 2004 Sep-Oct;6(5):325-35.

    PMID:
    15330865
    [PubMed - indexed for MEDLINE]
    7.

    Genome-scale analysis of positionally relocated genes.

    Bhutkar A, Russo SM, Smith TF, Gelbart WM.

    Genome Res. 2007 Dec;17(12):1880-7. Epub 2007 Nov 7.

    PMID:
    17989252
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Prospects for identifying functional variation across the genome.

    Macdonald SJ, Long AD.

    Proc Natl Acad Sci U S A. 2005 May 3;102 Suppl 1:6614-21. Epub 2005 Apr 25.

    PMID:
    15851675
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Comparative sequence analysis of a gene-dense region among closely related species of Drosophila melanogaster.

    Kawahara Y, Matsuo T, Nozawa M, Shin-I T, Kohara Y, Aigaki T.

    Genes Genet Syst. 2004 Dec;79(6):351-9.

    PMID:
    15729003
    [PubMed - indexed for MEDLINE]
    Free Article
    10.

    Big genomes facilitate the comparative identification of regulatory elements.

    Peterson BK, Hare EE, Iyer VN, Storage S, Conner L, Papaj DR, Kurashima R, Jang E, Eisen MB.

    PLoS One. 2009;4(3):e4688. Epub 2009 Mar 4.

    PMID:
    19259274
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Using comparative genomic hybridization to survey genomic sequence divergence across species: a proof-of-concept from Drosophila.

    Renn SC, Machado HE, Jones A, Soneji K, Kulathinal RJ, Hofmann HA.

    BMC Genomics. 2010 Apr 29;11:271.

    PMID:
    20429934
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome.

    Lipatov M, Lenkov K, Petrov DA, Bergman CM.

    BMC Biol. 2005 Nov 12;3:24.

    PMID:
    16283942
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Comparative genomics of accessory gland protein genes in Drosophila melanogaster and D. pseudoobscura.

    Wagstaff BJ, Begun DJ.

    Mol Biol Evol. 2005 Apr;22(4):818-32. Epub 2004 Dec 15.

    PMID:
    15601888
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes.

    Yang HP, Barbash DA.

    Genome Biol. 2008;9(2):R39. Epub 2008 Feb 21.

    PMID:
    18291035
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Homoplastic microinversions and the avian tree of life.

    Braun EL, Kimball RT, Han KL, Iuhasz-Velez NR, Bonilla AJ, Chojnowski JL, Smith JV, Bowie RC, Braun MJ, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Witt CC, Yuri T.

    BMC Evol Biol. 2011 May 25;11:141. doi: 10.1186/1471-2148-11-141.

    PMID:
    21612607
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    A recombinational portrait of the Drosophila pseudoobscura genome.

    Ortiz-Barrientos D, Chang AS, Noor MA.

    Genet Res. 2006 Feb;87(1):23-31.

    PMID:
    16545148
    [PubMed - indexed for MEDLINE]
    17.

    The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

    Kaminker JS, Bergman CM, Kronmiller B, Carlson J, Svirskas R, Patel S, Frise E, Wheeler DA, Lewis SE, Rubin GM, Ashburner M, Celniker SE.

    Genome Biol. 2002;3(12):RESEARCH0084. Epub 2002 Dec 23.

    PMID:
    12537573
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Conservation of regulatory elements between two species of Drosophila.

    Emberly E, Rajewsky N, Siggia ED.

    BMC Bioinformatics. 2003 Nov 20;4:57.

    PMID:
    14629780
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Comparison of dot chromosome sequences from D. melanogaster and D. virilis reveals an enrichment of DNA transposon sequences in heterochromatic domains.

    Slawson EE, Shaffer CD, Malone CD, Leung W, Kellmann E, Shevchek RB, Craig CA, Bloom SM, Bogenpohl J 2nd, Dee J, Morimoto ET, Myoung J, Nett AS, Ozsolak F, Tittiger ME, Zeug A, Pardue ML, Buhler J, Mardis ER, Elgin SC.

    Genome Biol. 2006;7(2):R15. Epub 2006 Feb 20.

    PMID:
    16507169
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Functional conservation of Rel binding sites in drosophilid genomes.

    Copley RR, Totrov M, Linnell J, Field S, Ragoussis J, Udalova IA.

    Genome Res. 2007 Sep;17(9):1327-35.

    PMID:
    17785540
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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