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    Results: 1 to 20 of 131

    1.

    yrGATE: a web-based gene-structure annotation tool for the identification and dissemination of eukaryotic genes.

    Wilkerson MD, Schlueter SD, Brendel V.

    Genome Biol. 2006;7(7):R58.

    PMID:
    16859520
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    GeneSeqer@PlantGDB: Gene structure prediction in plant genomes.

    Schlueter SD, Dong Q, Brendel V.

    Nucleic Acids Res. 2003 Jul 1;31(13):3597-600.

    PMID:
    12824374
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    PlantGDB: a resource for comparative plant genomics.

    Duvick J, Fu A, Muppirala U, Sabharwal M, Wilkerson MD, Lawrence CJ, Lushbough C, Brendel V.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D959-65. Epub 2007 Dec 6.

    PMID:
    18063570
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    PlantGDB, plant genome database and analysis tools.

    Dong Q, Schlueter SD, Brendel V.

    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D354-9.

    PMID:
    14681433
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome.

    Thibaud-Nissen F, Campbell M, Hamilton JP, Zhu W, Buell CR.

    BMC Genomics. 2007 Oct 25;8:388.

    PMID:
    17961238
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.

    Lee Y, Tsai J, Sunkara S, Karamycheva S, Pertea G, Sultana R, Antonescu V, Chan A, Cheung F, Quackenbush J.

    Nucleic Acids Res. 2005 Jan 1;33(Database issue):D71-4.

    PMID:
    15608288
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    The TIGR Rice Genome Annotation Resource: improvements and new features.

    Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CR.

    Nucleic Acids Res. 2007 Jan;35(Database issue):D883-7. Epub 2006 Dec 1.

    PMID:
    17145706
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Gene Structure Annotation at PlantGDB.

    Brendel V.

    Methods Mol Biol. 2007;406:521-33.

    PMID:
    18287710
    [PubMed - indexed for MEDLINE]
    10.

    GeneTools--application for functional annotation and statistical hypothesis testing.

    Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

    BMC Bioinformatics. 2006 Oct 24;7:470.

    PMID:
    17062145
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.

    Cruveiller S, Le Saux J, Vallenet D, Lajus A, Bocs S, Médigue C.

    Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W471-9.

    PMID:
    15980515
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome.

    Tcherepanov V, Ehlers A, Upton C.

    BMC Genomics. 2006 Jun 13;7:150.

    PMID:
    16772042
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    OrthoMCL: identification of ortholog groups for eukaryotic genomes.

    Li L, Stoeckert CJ Jr, Roos DS.

    Genome Res. 2003 Sep;13(9):2178-89.

    PMID:
    12952885
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.

    Avraham S, Tung CW, Ilic K, Jaiswal P, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Zapata F, Ware D.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D449-54.

    PMID:
    18194960
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

    Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

    BMC Bioinformatics. 2007 Apr 19;8:129.

    PMID:
    17445272
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.

    Linke B, McHardy AC, Neuweger H, Krause L, Meyer F.

    Appl Bioinformatics. 2006;5(3):193-8.

    PMID:
    16922601
    [PubMed - indexed for MEDLINE]
    17.

    SAGExplore: a web server for unambiguous tag mapping in serial analysis of gene expression oriented to gene discovery and annotation.

    Norambuena T, Malig R, Melo F.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W163-8. Epub 2007 Jul 10.

    PMID:
    17626053
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    GeneDB: a resource for prokaryotic and eukaryotic organisms.

    Hertz-Fowler C, Peacock CS, Wood V, Aslett M, Kerhornou A, Mooney P, Tivey A, Berriman M, Hall N, Rutherford K, Parkhill J, Ivens AC, Rajandream MA, Barrell B.

    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D339-43.

    PMID:
    14681429
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

    Stanke M, Diekhans M, Baertsch R, Haussler D.

    Bioinformatics. 2008 Mar 1;24(5):637-44. Epub 2008 Jan 24.

    PMID:
    18218656
    [PubMed - indexed for MEDLINE]
    Free Article
    20.

    Gene Ontology annotations at SGD: new data sources and annotation methods.

    Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. Epub 2007 Nov 3.

    PMID:
    17982175
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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