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Parameter estimation in biochemical systems models with alternating regression.

Chou IC, Martens H, Voit EO.

Theor Biol Med Model. 2006 Jul 19;3:25.PMID: 16854227 [PubMed - indexed for MEDLINE]Related articlesFree article

Parameter optimization in S-system models.

Vilela M, Chou IC, Vinga S, Vasconcelos AT, Voit EO, Almeida JS.

BMC Syst Biol. 2008 Apr 16;2:35.PMID: 18416837 [PubMed - indexed for MEDLINE]Related articlesFree article

Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems.

Rodriguez-Fernandez M, Egea JA, Banga JR.

BMC Bioinformatics. 2006 Nov 2;7:483.PMID: 17081289 [PubMed - indexed for MEDLINE]Related articlesFree article

Recent developments in parameter estimation and structure identification of biochemical and genomic systems.

Chou IC, Voit EO.

Math Biosci. 2009 Jun;219(2):57-83. Epub 2009 Mar 25. Review.PMID: 19327372 [PubMed - indexed for MEDLINE]Related articles

Parameter estimation in modulated, unbranched reaction chains within biochemical systems.

Lall R, Voit EO.

Comput Biol Chem. 2005 Oct;29(5):309-18. Epub 2005 Oct 6.PMID: 16213792 [PubMed - indexed for MEDLINE]Related articles

Priming nonlinear searches for pathway identification.

Veflingstad SR, Almeida J, Voit EO.

Theor Biol Med Model. 2004 Sep 14;1:8.PMID: 15367330 [PubMed - indexed for MEDLINE]Related articlesFree article

Parameter estimation for stiff equations of biosystems using radial basis function networks.

Matsubara Y, Kikuchi S, Sugimoto M, Tomita M.

BMC Bioinformatics. 2006 Apr 27;7:230.PMID: 16643665 [PubMed - indexed for MEDLINE]Related articlesFree article

Estimating parameters for generalized mass action models with connectivity information.

Ko CL, Voit EO, Wang FS.

BMC Bioinformatics. 2009 May 11;10:140.PMID: 19432964 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of neutral biochemical network models from time series data.

Vilela M, Vinga S, Maia MA, Voit EO, Almeida JS.

BMC Syst Biol. 2009 May 5;3:47.PMID: 19416537 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of metabolic system parameters using global optimization methods.

Polisetty PK, Voit EO, Gatzke EP.

Theor Biol Med Model. 2006 Jan 27;3:4.PMID: 16441881 [PubMed - indexed for MEDLINE]Related articlesFree article

A new method to estimate parameters of linear compartmental models using artificial neural networks.

Gambhir SS, Keppenne CL, Banerjee PK, Phelps ME.

Phys Med Biol. 1998 Jun;43(6):1659-78.PMID: 9651032 [PubMed - indexed for MEDLINE]Related articles

Neural-network-based parameter estimation in S-system models of biological networks.

Almeida JS, Voit EO.

Genome Inform. 2003;14:114-23.PMID: 15706526 [PubMed - indexed for MEDLINE]Related articles

Estimating parameters for generalized mass action models using constraint propagation.

Tucker W, Kutalik Z, Moulton V.

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S-system parameter estimation for noisy metabolic profiles using newton-flow analysis.

Kutalik Z, Tucker W, Moulton V.

IET Syst Biol. 2007 May;1(3):174-80.PMID: 17591176 [PubMed - indexed for MEDLINE]Related articles

Determination of stoichiometric association constants by a non-iterative computational method.

Laszlo JA.

Comput Appl Biosci. 1987 Nov;3(4):351-7.PMID: 3453244 [PubMed - indexed for MEDLINE]Related articles

Dynamic sensitivity analysis of biological systems.

Wu WH, Wang FS, Chang MS.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S17.PMID: 19091016 [PubMed - indexed for MEDLINE]Related articlesFree article

Parameter estimation in ordinary differential equations for biochemical processes using the method of multiple shooting.

Peifer M, Timmer J.

IET Syst Biol. 2007 Mar;1(2):78-88.PMID: 17441551 [PubMed - indexed for MEDLINE]Related articles

Hybrid optimization method with general switching strategy for parameter estimation.

Balsa-Canto E, Peifer M, Banga JR, Timmer J, Fleck C.

BMC Syst Biol. 2008 Mar 24;2:26.PMID: 18366722 [PubMed - indexed for MEDLINE]Related articlesFree article

An automated procedure for the extraction of metabolic network information from time series data.

Marino S, Voit EO.

J Bioinform Comput Biol. 2006 Jun;4(3):665-91.PMID: 16960969 [PubMed - indexed for MEDLINE]Related articles

Parameter identifiability of power-law biochemical system models.

Srinath S, Gunawan R.

J Biotechnol. 2010 Mar 1. [Epub ahead of print]PMID: 20197073 [PubMed - as supplied by publisher]Related articles