PubMed

A simplified method for power-law modelling of metabolic pathways from time-course data and steady-state flux profiles.

Kitayama T, Kinoshita A, Sugimoto M, Nakayama Y, Tomita M.

Theor Biol Med Model. 2006 Jul 17;3:24.PMID: 16846504 [PubMed - indexed for MEDLINE]Related articlesFree article

A two-dimensional mathematical model of non-linear dual-sorption of percutaneous drug absorption.

George K.

Biomed Eng Online. 2005 Jul 3;4:40.PMID: 15992411 [PubMed - indexed for MEDLINE]Related articlesFree article

Estimating parameters for generalized mass action models with connectivity information.

Ko CL, Voit EO, Wang FS.

BMC Bioinformatics. 2009 May 11;10:140.PMID: 19432964 [PubMed - indexed for MEDLINE]Related articlesFree article

Distinguishing enzymes using metabolome data for the hybrid dynamic/static method.

Ishii N, Nakayama Y, Tomita M.

Theor Biol Med Model. 2007 May 20;4:19.PMID: 17511884 [PubMed - indexed for MEDLINE]Related articlesFree article

Extraction of elementary rate constants from global network analysis of E. coli central metabolism.

Zhao J, Ridgway D, Broderick G, Kovalenko A, Ellison M.

BMC Syst Biol. 2008 May 7;2:41.PMID: 18462493 [PubMed - indexed for MEDLINE]Related articlesFree article

Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networks.

Hoppe A, Hoffmann S, Holzhütter HG.

BMC Syst Biol. 2007 Jun 1;1:23.PMID: 17543097 [PubMed - indexed for MEDLINE]Related articlesFree article

A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics.

Nikerel IE, van Winden WA, van Gulik WM, Heijnen JJ.

BMC Bioinformatics. 2006 Dec 21;7:540.PMID: 17184531 [PubMed - indexed for MEDLINE]Related articlesFree article

Hybrid dynamic/static method for large-scale simulation of metabolism.

Yugi K, Nakayama Y, Kinoshita A, Tomita M.

Theor Biol Med Model. 2005 Oct 4;2:42.PMID: 16202166 [PubMed - indexed for MEDLINE]Related articlesFree article

Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws--a promising method for speeding up the kinetic modelling of complex metabolic networks.

Bulik S, Grimbs S, Huthmacher C, Selbig J, Holzhütter HG.

FEBS J. 2009 Jan;276(2):410-24.PMID: 19137631 [PubMed - indexed for MEDLINE]Related articles

Inferring branching pathways in genome-scale metabolic networks.

Pitkänen E, Jouhten P, Rousu J.

BMC Syst Biol. 2009 Oct 29;3:103.PMID: 19874610 [PubMed - indexed for MEDLINE]Related articlesFree article

Piecewise multivariate modelling of sequential metabolic profiling data.

Rantalainen M, Cloarec O, Ebbels TM, Lundstedt T, Nicholson JK, Holmes E, Trygg J.

BMC Bioinformatics. 2008 Feb 19;9:105.PMID: 18284665 [PubMed - indexed for MEDLINE]Related articlesFree article

Steady-state analysis of metabolic pathways: comparing the double modulation method and the lin-log approach.

Link H, Weuster-Botz D.

Metab Eng. 2007 Sep-Nov;9(5-6):433-41. Epub 2007 Aug 14.PMID: 17889583 [PubMed - indexed for MEDLINE]Related articles

New time-scale criteria for model simplification of bio-reaction systems.

Choi J, Yang KW, Lee TY, Lee SY.

BMC Bioinformatics. 2008 Aug 12;9:338.PMID: 18694523 [PubMed - indexed for MEDLINE]Related articlesFree article

S-system parameter estimation for noisy metabolic profiles using newton-flow analysis.

Kutalik Z, Tucker W, Moulton V.

IET Syst Biol. 2007 May;1(3):174-80.PMID: 17591176 [PubMed - indexed for MEDLINE]Related articles

Identification of small scale biochemical networks based on general type system perturbations.

Schmidt H, Cho KH, Jacobsen EW.

FEBS J. 2005 May;272(9):2141-51.PMID: 15853799 [PubMed - indexed for MEDLINE]Related articlesFree article

Control of metabolic pathways by time-scale separation.

Delgado J, Liao JC.

Biosystems. 1995;36(1):55-70.PMID: 8527696 [PubMed - indexed for MEDLINE]Related articles

Dynamic simulation and metabolic re-design of a branched pathway using linlog kinetics.

Visser D, Heijnen JJ.

Metab Eng. 2003 Jul;5(3):164-76.PMID: 12948750 [PubMed - indexed for MEDLINE]Related articles

Estimation of steady-state flux rates in metabolic systems by computer simulations of radioactive tracer experiments.

Holzhütter HG, Schwendel A, Grune T, Quedenau J, Siems W.

Comput Appl Biosci. 1993 Oct;9(5):573-80.PMID: 8293330 [PubMed - indexed for MEDLINE]Related articles

Simplified modelling of metabolic pathways for flux prediction and optimization: lessons from an in vitro reconstruction of the upper part of glycolysis.

Fiévet JB, Dillmann C, Curien G, de Vienne D.

Biochem J. 2006 Jun 1;396(2):317-26.PMID: 16460310 [PubMed - indexed for MEDLINE]Related articlesFree article

Simplified method for the computation of parameters of power-law rate equations from time-series.

Díaz-Sierra R, Fairén V.

Math Biosci. 2001 May;171(1):1-19.PMID: 11325381 [PubMed - indexed for MEDLINE]Related articles