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    Results: 1 to 20 of 1735

    1.

    Tools for integrated sequence-structure analysis with UCSF Chimera.

    Meng EC, Pettersen EF, Couch GS, Huang CC, Ferrin TE.

    BMC Bioinformatics. 2006 Jul 12;7:339.PMID: 16836757 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

    Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

    BMC Bioinformatics. 2006 Oct 17;7:459.PMID: 17044936 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    UCSF Chimera--a visualization system for exploratory research and analysis.

    Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE.

    J Comput Chem. 2004 Oct;25(13):1605-12.PMID: 15264254 [PubMed - indexed for MEDLINE]Related articles

    4.

    MODBASE, a database of annotated comparative protein structure models, and associated resources.

    Pieper U, Eswar N, Braberg H, Madhusudhan MS, Davis FP, Stuart AC, Mirkovic N, Rossi A, Marti-Renom MA, Fiser A, Webb B, Greenblatt D, Huang CC, Ferrin TE, Sali A.

    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D217-22.PMID: 14681398 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Multiple Alignment of protein structures and sequences for VMD.

    Eargle J, Wright D, Luthey-Schulten Z.

    Bioinformatics. 2006 Feb 15;22(4):504-6. Epub 2005 Dec 8.PMID: 16339280 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    structureViz: linking Cytoscape and UCSF Chimera.

    Morris JH, Huang CC, Babbitt PC, Ferrin TE.

    Bioinformatics. 2007 Sep 1;23(17):2345-7. Epub 2007 Jul 10.PMID: 17623706 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    VISTAL--a new 2D visualization tool of protein 3D structural alignments.

    Kolodny R, Honig B.

    Bioinformatics. 2006 Sep 1;22(17):2166-7. Epub 2006 Jul 12.PMID: 16837525 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    MSAT: a multiple sequence alignment tool based on TOPS.

    Ren T, Veeramalai M, Tan AC, Gilbert D.

    Appl Bioinformatics. 2004;3(2-3):149-58.PMID: 15693740 [PubMed - indexed for MEDLINE]Related articles

    9.

    KISS for STRAP: user extensions for a protein alignment editor.

    Gille C, Lorenzen S, Michalsky E, Frömmel C.

    Bioinformatics. 2003 Dec 12;19(18):2489-91.PMID: 14668241 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Adding some SPICE to DAS.

    Prlić A, Down TA, Hubbard TJ.

    Bioinformatics. 2005 Sep 1;21 Suppl 2:ii40-1.PMID: 16204122 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Integrated tools for structural and sequence alignment and analysis.

    Huang CC, Novak WR, Babbitt PC, Jewett AI, Ferrin TE, Klein TE.

    Pac Symp Biocomput. 2000:230-41.PMID: 10902172 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.

    Scheeff ED, Bourne PE.

    BMC Bioinformatics. 2006 Sep 14;7:410.PMID: 16970830 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    MultiSeq: unifying sequence and structure data for evolutionary analysis.

    Roberts E, Eargle J, Wright D, Luthey-Schulten Z.

    BMC Bioinformatics. 2006 Aug 16;7:382.PMID: 16914055 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    MollDE: a homology modeling framework you can click with.

    Canutescu AA, Dunbrack RL Jr.

    Bioinformatics. 2005 Jun 15;21(12):2914-6. Epub 2005 Apr 21.PMID: 15845657 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    ViTO: tool for refinement of protein sequence-structure alignments.

    Catherinot V, Labesse G.

    Bioinformatics. 2004 Dec 12;20(18):3694-6. Epub 2004 Jul 22.PMID: 15271783 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

    Arnold K, Bordoli L, Kopp J, Schwede T.

    Bioinformatics. 2006 Jan 15;22(2):195-201. Epub 2005 Nov 13.PMID: 16301204 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    A computational pipeline for protein structure prediction and analysis at genome scale.

    Shah M, Passovets S, Kim D, Ellrott K, Wang L, Vokler I, LoCascio P, Xu D, Xu Y.

    Bioinformatics. 2003 Oct 12;19(15):1985-96.PMID: 14555633 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    PASS2: an automated database of protein alignments organised as structural superfamilies.

    Bhaduri A, Pugalenthi G, Sowdhamini R.

    BMC Bioinformatics. 2004 Apr 2;5:35.PMID: 15059245 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

    Côté RG, Jones P, Martens L, Kerrien S, Reisinger F, Lin Q, Leinonen R, Apweiler R, Hermjakob H.

    BMC Bioinformatics. 2007 Oct 18;8:401.PMID: 17945017 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Identification of similar regions of protein structures using integrated sequence and structure analysis tools.

    Peters B, Moad C, Youn E, Buffington K, Heiland R, Mooney S.

    BMC Struct Biol. 2006 Mar 9;6:4.PMID: 16526955 [PubMed - indexed for MEDLINE]Related articlesFree article

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