Warning: The NCBI web site requires JavaScript to function. more...
A steganalysis-based approach to comprehensive identification and characterization of functional regulatory elements.
Wang G, Zhang W.
Genome Biol. 2006;7(6):R49.
Related citations
WordSpy: identifying transcription factor binding motifs by building a dictionary and learning a grammar.
Wang G, Yu T, Zhang W.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W412-6.
Identifying the conserved network of cis-regulatory sites of a eukaryotic genome.
Wang T, Stormo GD.
Proc Natl Acad Sci U S A. 2005 Nov 29;102(48):17400-5. Epub 2005 Nov 21.
XcisClique: analysis of regulatory bicliques.
Pati A, Vasquez-Robinet C, Heath LS, Grene R, Murali TM.
BMC Bioinformatics. 2006 Apr 21;7:218.
A universal algorithm for genome-wide in silicio identification of biologically significant gene promoter putative cis-regulatory-elements; identification of new elements for reactive oxygen species and sucrose signaling in Arabidopsis.
Geisler M, Kleczkowski LA, Karpinski S.
Plant J. 2006 Feb;45(3):384-98.
In silico discovery of transcription regulatory elements in Plasmodium falciparum.
Young JA, Johnson JR, Benner C, Yan SF, Chen K, Le Roch KG, Zhou Y, Winzeler EA.
BMC Genomics. 2008 Feb 7;9:70.
Eukaryotic regulatory element conservation analysis and identification using comparative genomics.
Liu Y, Liu XS, Wei L, Altman RB, Batzoglou S.
Genome Res. 2004 Mar;14(3):451-8.
Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.
Kim SY, Kim Y.
BMC Bioinformatics. 2006 Jul 4;7:330.
Deciphering transcriptional regulatory elements that encode specific cell cycle phasing by comparative genomics analysis.
Linhart C, Elkon R, Shiloh Y, Shamir R.
Cell Cycle. 2005 Dec;4(12):1788-97. Epub 2005 Dec 13.
PRECISE: software for prediction of cis-acting regulatory elements.
Trindade LM, van Berloo R, Fiers M, Visser RG.
J Hered. 2005 Sep-Oct;96(5):618-22. Epub 2005 Aug 31.
Identification of putative cis-regulatory elements in Cryptosporidium parvum by de novo pattern finding.
Mullapudi N, Lancto CA, Abrahamsen MS, Kissinger JC.
BMC Genomics. 2007 Jan 9;8:13.
Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves.
Berendzen KW, Stüber K, Harter K, Wanke D.
BMC Bioinformatics. 2006 Nov 30;7:522.
Identifying pattern-defined regulatory islands in mammalian genomes.
Cheung TH, Barthel KK, Kwan YL, Liu X.
Proc Natl Acad Sci U S A. 2007 Jun 12;104(24):10116-21. Epub 2007 May 29.
Identification of yeast transcriptional regulation networks using multivariate random forests.
Xiao Y, Segal MR.
PLoS Comput Biol. 2009 Jun;5(6):e1000414. Epub 2009 Jun 19.
Genome-wide screening for cis-regulatory variation using a classical diallel crossing scheme.
Kiekens R, Vercauteren A, Moerkerke B, Goetghebeur E, Van Den Daele H, Sterken R, Kuiper M, van Eeuwijk F, Vuylsteke M.
Nucleic Acids Res. 2006 Aug 2;34(13):3677-86. Print 2006. Erratum in: Nucleic Acids Res. 2007;35(3):1038.
Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines.
Xu X, Ji Y, Stormo GD.
PLoS Comput Biol. 2009 Apr;5(4):e1000338. Epub 2009 Apr 3.
A motif extraction algorithm based on hashing and modulo-4 arithmetic.
Sheng H, Mehrotra K, Mohan C, Raina R.
Int J Comput Biol Drug Des. 2008;1(2):185-99.
Identifying regulatory networks by combinatorial analysis of promoter elements.
Pilpel Y, Sudarsanam P, Church GM.
Nat Genet. 2001 Oct;29(2):153-9.
Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification.
Lin LH, Lee HC, Li WH, Chen BS.
BMC Bioinformatics. 2005 Oct 18;6:258.
Regulatory element detection using correlation with expression.
Bussemaker HJ, Li H, Siggia ED.
Nat Genet. 2001 Feb;27(2):167-71.
Filter your results:
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on