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    Results: 1 to 20 of 535

    1.

    Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks.

    Reiss DJ, Baliga NS, Bonneau R.

    BMC Bioinformatics. 2006 Jun 2;7:280.PMID: 16749936 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    CompMoby: comparative MobyDick for detection of cis-regulatory motifs.

    Chaivorapol C, Melton C, Wei G, Yeh RF, Ramalho-Santos M, Blelloch R, Li H.

    BMC Bioinformatics. 2008 Oct 27;9:455.PMID: 18950538 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Discovering biclusters in gene expression data based on high-dimensional linear geometries.

    Gan X, Liew AW, Yan H.

    BMC Bioinformatics. 2008 Apr 23;9:209.PMID: 18433477 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies.

    DiMaggio PA Jr, McAllister SR, Floudas CA, Feng XJ, Rabinowitz JD, Rabitz HA.

    BMC Bioinformatics. 2008 Oct 27;9:458.PMID: 18954459 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo.

    Bonneau R, Reiss DJ, Shannon P, Facciotti M, Hood L, Baliga NS, Thorsson V.

    Genome Biol. 2006;7(5):R36. Epub 2006 May 10.PMID: 16686963 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites.

    Qin ZS, McCue LA, Thompson W, Mayerhofer L, Lawrence CE, Liu JS.

    Nat Biotechnol. 2003 Apr;21(4):435-9. Epub 2003 Mar 10.PMID: 12627170 [PubMed - indexed for MEDLINE]Related articles

    7.

    Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization.

    Cheng KO, Law NF, Siu WC, Liew AW.

    BMC Bioinformatics. 2008 Apr 23;9:210.PMID: 18433478 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Analysis of differentially-regulated genes within a regulatory network by GPS genome navigation.

    Zwir I, Huang H, Groisman EA.

    Bioinformatics. 2005 Nov 15;21(22):4073-83. Epub 2005 Sep 13.PMID: 16159917 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Microarray data mining using landmark gene-guided clustering.

    Chopra P, Kang J, Yang J, Cho H, Kim HS, Lee MG.

    BMC Bioinformatics. 2008 Feb 11;9:92.PMID: 18267003 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    A new geometric biclustering algorithm based on the Hough transform for analysis of large-scale microarray data.

    Zhao H, Liew AW, Xie X, Yan H.

    J Theor Biol. 2008 Mar 21;251(2):264-74. Epub 2007 Dec 4.PMID: 18199458 [PubMed - indexed for MEDLINE]Related articles

    11.

    Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals.

    Reneker J, Shyu CR.

    BMC Bioinformatics. 2005 May 3;6:111.PMID: 15869708 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Cluster analysis and promoter modelling as bioinformatics tools for the identification of target genes from expression array data.

    Werner T.

    Pharmacogenomics. 2001 Feb;2(1):25-36. Review.PMID: 11258194 [PubMed - indexed for MEDLINE]Related articles

    13.

    Mining gene expression data by interpreting principal components.

    Roden JC, King BW, Trout D, Mortazavi A, Wold BJ, Hart CE.

    BMC Bioinformatics. 2006 Apr 7;7:194.PMID: 16600052 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.

    Kim SY, Kim Y.

    BMC Bioinformatics. 2006 Jul 4;7:330.PMID: 16817975 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Inferring regulatory elements from a whole genome. An analysis of Helicobacter pylori sigma(80) family of promoter signals.

    Vanet A, Marsan L, Labigne A, Sagot MF.

    J Mol Biol. 2000 Mar 24;297(2):335-53.PMID: 10715205 [PubMed - indexed for MEDLINE]Related articles

    16.

    FLAME, a novel fuzzy clustering method for the analysis of DNA microarray data.

    Fu L, Medico E.

    BMC Bioinformatics. 2007 Jan 4;8:3.PMID: 17204155 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions.

    Qian J, Dolled-Filhart M, Lin J, Yu H, Gerstein M.

    J Mol Biol. 2001 Dec 14;314(5):1053-66.PMID: 11743722 [PubMed - indexed for MEDLINE]Related articles

    18.

    Biclustering algorithms for biological data analysis: a survey.

    Madeira SC, Oliveira AL.

    IEEE/ACM Trans Comput Biol Bioinform. 2004 Jan-Mar;1(1):24-45.PMID: 17048406 [PubMed - indexed for MEDLINE]Related articles

    19.

    A new strategy of cooperativity of biclustering and hierarchical clustering: a case of analyzing yeast genomic microarray datasets.

    Mao D, Luo Y, Zhang J, Zhu J.

    Front Biosci. 2005 May 1;10:1619-27.PMID: 15769651 [PubMed - indexed for MEDLINE]Related articles

    20.

    Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes.

    Datta S, Datta S.

    BMC Bioinformatics. 2006 Aug 31;7:397.PMID: 16945146 [PubMed - indexed for MEDLINE]Related articlesFree article

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