PubMed

Distinguishing HIV-1 drug resistance, accessory, and viral fitness mutations using conditional selection pressure analysis of treated versus untreated patient samples.

Chen L, Lee C.

Biol Direct. 2006 May 31;1:14.PMID: 16737543 [PubMed]Related articlesFree article

Positive selection detection in 40,000 human immunodeficiency virus (HIV) type 1 sequences automatically identifies drug resistance and positive fitness mutations in HIV protease and reverse transcriptase.

Chen L, Perlina A, Lee CJ.

J Virol. 2004 Apr;78(7):3722-32.PMID: 15016892 [PubMed - indexed for MEDLINE]Related articlesFree article

N348I in the connection domain of HIV-1 reverse transcriptase confers zidovudine and nevirapine resistance.

Yap SH, Sheen CW, Fahey J, Zanin M, Tyssen D, Lima VD, Wynhoven B, Kuiper M, Sluis-Cremer N, Harrigan PR, Tachedjian G.

PLoS Med. 2007 Dec;4(12):e335.PMID: 18052601 [PubMed - indexed for MEDLINE]Related articlesFree article

Pairwise and higher-order correlations among drug-resistance mutations in HIV-1 subtype B protease.

Haq O, Levy RM, Morozov AV, Andrec M.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S10.PMID: 19758465 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of HCV protease inhibitor resistance mutations by selection pressure-based method.

Qiu P, Sanfiorenzo V, Curry S, Guo Z, Liu S, Skelton A, Xia E, Cullen C, Ralston R, Greene J, Tong X.

Nucleic Acids Res. 2009 Jun;37(10):e74. Epub 2009 Apr 24.PMID: 19395595 [PubMed - indexed for MEDLINE]Related articlesFree article

The HIV positive selection mutation database.

Pan C, Kim J, Chen L, Wang Q, Lee C.

Nucleic Acids Res. 2007 Jan;35(Database issue):D371-5. Epub 2006 Nov 15.PMID: 17108357 [PubMed - indexed for MEDLINE]Related articlesFree article

Darunavir: a review of its use in the management of HIV infection in adults.

McKeage K, Perry CM, Keam SJ.

Drugs. 2009;69(4):477-503. doi: 10.2165/00003495-200969040-00007. Review.PMID: 19323590 [PubMed - indexed for MEDLINE]Related articles

Characterization and structural analysis of HIV-1 integrase conservation.

Ceccherini-Silberstein F, Malet I, D'Arrigo R, Antinori A, Marcelin AG, Perno CF.

AIDS Rev. 2009 Jan-Mar;11(1):17-29. Review.PMID: 19290031 [PubMed - indexed for MEDLINE]Related articles

HIV-1 subtype B protease and reverse transcriptase amino acid covariation.

Rhee SY, Liu TF, Holmes SP, Shafer RW.

PLoS Comput Biol. 2007 May;3(5):e87.PMID: 17500586 [PubMed - indexed for MEDLINE]Related articlesFree article

A novel substrate-based HIV-1 protease inhibitor drug resistance mechanism.

Nijhuis M, van Maarseveen NM, Lastere S, Schipper P, Coakley E, Glass B, Rovenska M, de Jong D, Chappey C, Goedegebuure IW, Heilek-Snyder G, Dulude D, Cammack N, Brakier-Gingras L, Konvalinka J, Parkin N, Kräusslich HG, Brun-Vezinet F, Boucher CA.

PLoS Med. 2007 Jan;4(1):e36.PMID: 17227139 [PubMed - indexed for MEDLINE]Related articlesFree article

Minority HIV-1 drug resistance mutations are present in antiretroviral treatment-naïve populations and associate with reduced treatment efficacy.

Johnson JA, Li JF, Wei X, Lipscomb J, Irlbeck D, Craig C, Smith A, Bennett DE, Monsour M, Sandstrom P, Lanier ER, Heneine W.

PLoS Med. 2008 Jul 29;5(7):e158.PMID: 18666824 [PubMed - indexed for MEDLINE]Related articlesFree article

Polymorphisms and drug resistance analysis of HIV-1 CRF01_AE strains circulating in Fujian Province, China.

Liu J, Yue J, Wu S, Yan Y.

Arch Virol. 2007;152(10):1799-805. Epub 2007 Jul 6.PMID: 17619115 [PubMed - indexed for MEDLINE]Related articles

HIV type 1 pol gene diversity and antiretroviral drug resistance mutations in Santos, Brazil.

de Sa-Filho DJ, Soares Mda S, Candido V, Gagliani LH, Cavaliere E, Diaz RS, Caseiro MM.

AIDS Res Hum Retroviruses. 2008 Mar;24(3):347-53.PMID: 18327988 [PubMed - indexed for MEDLINE]Related articles

Characterization of drug-resistance mutations in HIV type 1 isolates from drug-naive and ARV-treated patients in Bulgaria.

Santoro MM, Ciccozzi M, Alteri C, Montieri S, Alexiev I, Dimova I, Ceccherini-Silberstein F, Beshkov D, Rezza G, Perno CF.

AIDS Res Hum Retroviruses. 2008 Sep;24(9):1133-8.PMID: 18788909 [PubMed - indexed for MEDLINE]Related articles

Two different patterns of mutations are involved in the genotypic resistance score for atazanavir boosted versus unboosted by ritonavir in multiple failing patients.

Santoro MM, Bertoli A, Lorenzini P, Ceccherini-Silberstein F, Gianotti N, Mussini C, Torti C, Di Perri G, Barbarini G, Bini T, Melzi S, Caramello P, Maserati R, Narciso P, Micheli V, Antinori A, Perno CF; CARe Study Group.

Infection. 2009 Jun;37(3):233-43. Epub 2009 Jan 23.PMID: 19169632 [PubMed - indexed for MEDLINE]Related articles

Emergence of multiclass drug-resistance in HIV-2 in antiretroviral-treated individuals in Senegal: implications for HIV-2 treatment in resouce-limited West Africa.

Gottlieb GS, Badiane NM, Hawes SE, Fortes L, Toure M, Ndour CT, Starling AK, Traore F, Sall F, Wong KG, Cherne SL, Anderson DJ, Dye SA, Smith RA, Mullins JI, Kiviat NB, Sow PS; University of Washington-Dakar HIV-2 Study Group.

Clin Infect Dis. 2009 Feb 15;48(4):476-83. Erratum in: Clin Infect Dis. 2009 Mar 15;48(6):848. PMID: 19143530 [PubMed - indexed for MEDLINE]Related articles

Novel drug resistance mutations in HIV: recognition and clinical relevance.

Perno CF, Svicher V, Ceccherini-Silberstein F.

AIDS Rev. 2006 Oct-Dec;8(4):179-90. Review.PMID: 17219733 [PubMed - indexed for MEDLINE]Related articles

Distinguishing functional amino acid covariation from background linkage disequilibrium in HIV protease and reverse transcriptase.

Wang Q, Lee C.

PLoS One. 2007 Aug 29;2(8):e814.PMID: 17726544 [PubMed - in process]Related articlesFree article

Molecular epidemiology and prevalence of drug resistance-associated mutations in newly diagnosed HIV-1 patients in Portugal.

Palma AC, Araújo F, Duque V, Borges F, Paixão MT, Camacho R; Portuguese SPREAD Network.

Infect Genet Evol. 2007 Jun;7(3):391-8. Epub 2007 Feb 8.PMID: 17360244 [PubMed - indexed for MEDLINE]Related articles

Increasing HIV type 1 polymorphic diversity but no resistance to antiretroviral drugs in untreated patients from Central African Republic: a 2005 study.

Marechal V, Jauvin V, Selekon B, Leal J, Pelembi P, Fikouma V, Gabrie P, Heredeibona LS, Goumba C, Serdouma E, Ayouba A, Fleury H.

AIDS Res Hum Retroviruses. 2006 Oct;22(10):1036-44.PMID: 17067275 [PubMed - indexed for MEDLINE]Related articles