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On the maximal cliques in c-max-tolerance graphs and their application in clustering molecular sequences.

Lehmann KA, Kaufmann M, Steigele S, Nieselt K.

Algorithms Mol Biol. 2006 May 31;1(1):9.PMID: 16737529 [PubMed]Related articlesFree article

Approximating maximum clique with a Hopfield network.

Jagota A.

IEEE Trans Neural Netw. 1995;6(3):724-35.PMID: 18263357 [PubMed - in process]Related articles

An algorithm for finding maximal common subtopologies in a set of protein structures.

Koch I, Lengauer T, Wanke E.

J Comput Biol. 1996 Summer;3(2):289-306.PMID: 8811488 [PubMed - indexed for MEDLINE]Related articles

Uniform integration of genome mapping data using intersection graphs.

Harley E, Bonner A, Goodman N.

Bioinformatics. 2001 Jun;17(6):487-94.PMID: 11395425 [PubMed - indexed for MEDLINE]Related articlesFree article

Parallel clustering algorithm for large data sets with applications in bioinformatics.

Olman V, Mao F, Wu H, Xu Y.

IEEE/ACM Trans Comput Biol Bioinform. 2009 Apr-Jun;6(2):344-52.PMID: 19407357 [PubMed - indexed for MEDLINE]Related articles

Markov clustering versus affinity propagation for the partitioning of protein interaction graphs.

Vlasblom J, Wodak SJ.

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A decomposition theory for phylogenetic networks and incompatible characters.

Gusfield D, Bansal V, Bafna V, Song YS.

J Comput Biol. 2007 Dec;14(10):1247-72.PMID: 18047426 [PubMed - indexed for MEDLINE]Related articlesFree article

Exact and heuristic algorithms for weighted cluster editing.

Rahmann S, Wittkop T, Baumbach J, Martin M, Truss A, Böcker S.

Comput Syst Bioinformatics Conf. 2007;6:391-401.PMID: 17951842 [PubMed - indexed for MEDLINE]Related articlesFree article

Interaction graph mining for protein complexes using local clique merging.

Li XL, Tan SH, Foo CS, Ng SK.

Genome Inform. 2005;16(2):260-9.PMID: 16901108 [PubMed - indexed for MEDLINE]Related articles

Ortholog clustering on a multipartite graph.

Vashist A, Kulikowski CA, Muchnik I.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):17-27.PMID: 17277410 [PubMed - indexed for MEDLINE]Related articles

Breaking the hierarchy--a new cluster selection mechanism for hierarchical clustering methods.

Zahoránszky LA, Katona GY, Hári P, Málnási-Csizmadia A, Zweig KA, Zahoránszky-Köhalmi G.

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Finding local community structure in networks.

Clauset A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Aug;72(2 Pt 2):026132. Epub 2005 Aug 29.PMID: 16196669 [PubMed]Related articles

Polynomial iterative algorithms for coloring and analyzing random graphs.

Braunstein A, Mulet R, Pagnani A, Weigt M, Zecchina R.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Sep;68(3 Pt 2):036702. Epub 2003 Sep 3.PMID: 14524921 [PubMed]Related articles

An impatient evolutionary algorithm with probabilistic tabu search for unified solution of some NP-hard problems in graph and set theory via clique finding.

Guturu P, Dantu R.

IEEE Trans Syst Man Cybern B Cybern. 2008 Jun;38(3):645-66.PMID: 18558530 [PubMed - indexed for MEDLINE]Related articles

A graph theoretic approach to the development of minimal phylogenetic trees.

Foulds LR, Hendy MD, Penny D.

J Mol Evol. 1979 Jul 18;13(2):127-49.PMID: 480370 [PubMed - indexed for MEDLINE]Related articles

THE KINETICS OF THE BACTERIUM-BACTERIOPHAGE REACTION.

Krueger AP, Northrop JH.

J Gen Physiol. 1930 Nov 20;14(2):223-254.PMID: 19872583 [PubMed - as supplied by publisher]Related articlesFree article

Clustering analysis of the ground-state structure of the vertex-cover problem.

Barthel W, Hartmann AK.

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Dec;70(6 Pt 2):066120. Epub 2004 Dec 10.PMID: 15697447 [PubMed]Related articles

Low autocorrelated multiphase sequences.

Ein-Dor L, Kanter I, Kinzel W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Feb;65(2 Pt 1):020102. Epub 2002 Jan 15.PMID: 11863493 [PubMed]Related articles

CGTS: a site-clustering graph based tagSNP selection algorithm in genotype data.

Wang J, Guo MZ, Wang CY.

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Dynamic graph cuts for efficient inference in Markov Random Fields.

Kohli P, Torr PH.

IEEE Trans Pattern Anal Mach Intell. 2007 Dec;29(12):2079-88.PMID: 17934219 [PubMed - indexed for MEDLINE]Related articles