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    Results: 1 to 20 of 748

    1.

    ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context.

    Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Dalla Favera R, Califano A.

    BMC Bioinformatics. 2006 Mar 20;7 Suppl 1:S7.PMID: 16723010 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Reverse engineering cellular networks.

    Margolin AA, Wang K, Lim WK, Kustagi M, Nemenman I, Califano A.

    Nat Protoc. 2006;1(2):662-71.PMID: 17406294 [PubMed - indexed for MEDLINE]Related articles

    3.

    Network inference algorithms elucidate Nrf2 regulation of mouse lung oxidative stress.

    Taylor RC, Acquaah-Mensah G, Singhal M, Malhotra D, Biswal S.

    PLoS Comput Biol. 2008 Aug 29;4(8):e1000166.PMID: 18769717 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Reverse engineering of regulatory networks in human B cells.

    Basso K, Margolin AA, Stolovitzky G, Klein U, Dalla-Favera R, Califano A.

    Nat Genet. 2005 Apr;37(4):382-90. Epub 2005 Mar 20.PMID: 15778709 [PubMed - indexed for MEDLINE]Related articles

    5.

    Fast calculation of pairwise mutual information for gene regulatory network reconstruction.

    Qiu P, Gentles AJ, Plevritis SK.

    Comput Methods Programs Biomed. 2009 May;94(2):177-80. Epub 2009 Jan 22.PMID: 19167129 [PubMed - indexed for MEDLINE]Related articles

    6.

    A copula method for modeling directional dependence of genes.

    Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

    BMC Bioinformatics. 2008 May 1;9:225.PMID: 18447957 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Computational and experimental approaches for modeling gene regulatory networks.

    Goutsias J, Lee NH.

    Curr Pharm Des. 2007;13(14):1415-36. Review.PMID: 17504165 [PubMed - indexed for MEDLINE]Related articles

    8.

    Reconstruction of metabolic networks from high-throughput metabolite profiling data: in silico analysis of red blood cell metabolism.

    Nemenman I, Escola GS, Hlavacek WS, Unkefer PJ, Unkefer CJ, Wall ME.

    Ann N Y Acad Sci. 2007 Dec;1115:102-15. Epub 2007 Oct 9.PMID: 17925356 [PubMed - indexed for MEDLINE]Related articles

    9.

    Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.

    Kim SY, Kim Y.

    BMC Bioinformatics. 2006 Jul 4;7:330.PMID: 16817975 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Inferring regulatory networks.

    Li H, Xuan J, Wang Y, Zhan M.

    Front Biosci. 2008 Jan 1;13:263-75. Review.PMID: 17981545 [PubMed - indexed for MEDLINE]Related articles

    11.

    Quantitative inference of dynamic regulatory pathways via microarray data.

    Chang WC, Li CW, Chen BS.

    BMC Bioinformatics. 2005 Mar 7;6:44.PMID: 15748298 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    minet: A R/Bioconductor package for inferring large transcriptional networks using mutual information.

    Meyer PE, Lafitte F, Bontempi G.

    BMC Bioinformatics. 2008 Oct 29;9:461.PMID: 18959772 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    A network inference workflow applied to virulence-related processes in Salmonella typhimurium.

    Taylor RC, Singhal M, Weller J, Khoshnevis S, Shi L, McDermott J.

    Ann N Y Acad Sci. 2009 Mar;1158:143-58.PMID: 19348639 [PubMed - indexed for MEDLINE]Related articles

    14.

    Sample scale-free gene regulatory network using gene ontology.

    Chen G, Larsen P, Almasri E, Dai Y.

    Conf Proc IEEE Eng Med Biol Soc. 2006;1:5523-6.PMID: 17946312 [PubMed - indexed for MEDLINE]Related articles

    15.

    Factor analysis for gene regulatory networks and transcription factor activity profiles.

    Pournara I, Wernisch L.

    BMC Bioinformatics. 2007 Feb 23;8:61.PMID: 17319944 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory.

    Sayyed-Ahmad A, Tuncay K, Ortoleva PJ.

    BMC Bioinformatics. 2007 Jan 23;8:20.PMID: 17244365 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Inferring connectivity of genetic regulatory networks using information-theoretic criteria.

    Zhao W, Serpedin E, Dougherty ER.

    IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun;5(2):262-74.PMID: 18451435 [PubMed - indexed for MEDLINE]Related articles

    18.

    Rank-based edge reconstruction for scale-free genetic regulatory networks.

    Chen G, Larsen P, Almasri E, Dai Y.

    BMC Bioinformatics. 2008 Jan 31;9:75.PMID: 18237422 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Bayesian Orthogonal Least Squares (BOLS) algorithm for reverse engineering of gene regulatory networks.

    Kim CS.

    BMC Bioinformatics. 2007 Jul 13;8:251.PMID: 17626641 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    A gene network simulator to assess reverse engineering algorithms.

    Di Camillo B, Toffolo G, Cobelli C.

    Ann N Y Acad Sci. 2009 Mar;1158:125-42.PMID: 19348638 [PubMed - indexed for MEDLINE]Related articles

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