PubMed

The TREC 2004 genomics track categorization task: classifying full text biomedical documents.

Cohen AM, Hersh WR.

J Biomed Discov Collab. 2006 Mar 14;1:4.PMID: 16722582 [PubMed]Related articlesFree article

Integrating image data into biomedical text categorization.

Shatkay H, Chen N, Blostein D.

Bioinformatics. 2006 Jul 15;22(14):e446-53.PMID: 16873506 [PubMed - indexed for MEDLINE]Related articlesFree article

Enhancing access to the Bibliome: the TREC 2004 Genomics Track.

Hersh WR, Bhupatiraju RT, Ross L, Roberts P, Cohen AM, Kraemer DF.

J Biomed Discov Collab. 2006 Mar 13;1:3.PMID: 16722581 [PubMed]Related articlesFree article

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation.

Van Auken K, Jaffery J, Chan J, Müller HM, Sternberg PW.

BMC Bioinformatics. 2009 Jul 21;10:228.PMID: 19622167 [PubMed - indexed for MEDLINE]Related articlesFree article

Evaluation of BioCreAtIvE assessment of task 2.

Blaschke C, Leon EA, Krallinger M, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S16. Epub 2005 May 24.PMID: 15960828 [PubMed - indexed for MEDLINE]Related articlesFree article

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.PMID: 15960829 [PubMed - indexed for MEDLINE]Related articlesFree article

Data-poor categorization and passage retrieval for gene ontology annotation in Swiss-Prot.

Ehrler F, Geissbühler A, Jimeno A, Ruch P.

BMC Bioinformatics. 2005;6 Suppl 1:S23. Epub 2005 May 24.PMID: 15960836 [PubMed - indexed for MEDLINE]Related articlesFree article

Overview of the protein-protein interaction annotation extraction task of BioCreative II.

Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S4. Epub 2008 Sep 1.PMID: 18834495 [PubMed - indexed for MEDLINE]Related articlesFree article

Enhancing access to the Bibliome: the TREC Genomics Track.

Hersh W, Bhupatiraju RT, Corley S.

Stud Health Technol Inform. 2004;107(Pt 2):773-7.PMID: 15360917 [PubMed - indexed for MEDLINE]Related articles

Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users.

Shatkay H, Pan F, Rzhetsky A, Wilbur WJ.

Bioinformatics. 2008 Sep 15;24(18):2086-93. Epub 2008 Aug 20.PMID: 18718948 [PubMed - indexed for MEDLINE]Related articlesFree article

A comparative analysis of retrieval features used in the TREC 2006 Genomics Track passage retrieval task.

Rekapalli HK, Cohen AM, Hersh WR.

AMIA Annu Symp Proc. 2007 Oct 11:620-4.PMID: 18693910 [PubMed - indexed for MEDLINE]Related articlesFree article

Objective and automated protocols for the evaluation of biomedical search engines using No Title Evaluation protocols.

Campagne F.

BMC Bioinformatics. 2008 Feb 29;9:132.PMID: 18312673 [PubMed - indexed for MEDLINE]Related articlesFree article

Mining protein function from text using term-based support vector machines.

Rice SB, Nenadic G, Stapley BJ.

BMC Bioinformatics. 2005;6 Suppl 1:S22. Epub 2005 May 24.PMID: 15960835 [PubMed - indexed for MEDLINE]Related articlesFree article

Protein annotation as term categorization in the gene ontology using word proximity networks.

Verspoor K, Cohn J, Joslyn C, Mniszewski S, Rechtsteiner A, Rocha LM, Simas T.

BMC Bioinformatics. 2005;6 Suppl 1:S20. Epub 2005 May 24.PMID: 15960833 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

BMC Bioinformatics. 2007 Jul 10;8:243.PMID: 17620146 [PubMed - indexed for MEDLINE]Related articlesFree article

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

Genome Biol. 2008;9 Suppl 2:S1. Epub 2008 Sep 1.PMID: 18834487 [PubMed - indexed for MEDLINE]Related articlesFree article

New directions in biomedical text annotation: definitions, guidelines and corpus construction.

Wilbur WJ, Rzhetsky A, Shatkay H.

BMC Bioinformatics. 2006 Jul 25;7:356.PMID: 16867190 [PubMed - indexed for MEDLINE]Related articlesFree article

Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks.

Abi-Haidar A, Kaur J, Maguitman A, Radivojac P, Rechtsteiner A, Verspoor K, Wang Z, Rocha LM.

Genome Biol. 2008;9 Suppl 2:S11. Epub 2008 Sep 1.PMID: 18834489 [PubMed - indexed for MEDLINE]Related articlesFree article

Essie: a concept-based search engine for structured biomedical text.

Ide NC, Loane RF, Demner-Fushman D.

J Am Med Inform Assoc. 2007 May-Jun;14(3):253-63. Epub 2007 Feb 28.PMID: 17329729 [PubMed - indexed for MEDLINE]Related articlesFree article

Extraction of semantic biomedical relations from text using conditional random fields.

Bundschus M, Dejori M, Stetter M, Tresp V, Kriegel HP.

BMC Bioinformatics. 2008 Apr 23;9:207.PMID: 18433469 [PubMed - indexed for MEDLINE]Related articlesFree article