PubMed

Predicting DNA-binding sites of proteins from amino acid sequence.

Yan C, Terribilini M, Wu F, Jernigan RL, Dobbs D, Honavar V.

BMC Bioinformatics. 2006 May 19;7:262.PMID: 16712732 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of RNA binding sites in proteins from amino acid sequence.

Terribilini M, Lee JH, Yan C, Jernigan RL, Honavar V, Dobbs D.

RNA. 2006 Aug;12(8):1450-62. Epub 2006 Jun 21.PMID: 16790841 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of DNA-binding residues from protein sequence information using random forests.

Wang L, Yang MQ, Yang JY.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S1.PMID: 19594868 [PubMed - indexed for MEDLINE]Related articlesFree article

RNABindR: a server for analyzing and predicting RNA-binding sites in proteins.

Terribilini M, Sander JD, Lee JH, Zaback P, Jernigan RL, Honavar V, Dobbs D.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W578-84. Epub 2007 May 5.PMID: 17483510 [PubMed - indexed for MEDLINE]Related articlesFree article

PSSM-based prediction of DNA binding sites in proteins.

Ahmad S, Sarai A.

BMC Bioinformatics. 2005 Feb 19;6:33.PMID: 15720719 [PubMed - indexed for MEDLINE]Related articlesFree article

Glycosylation site prediction using ensembles of Support Vector Machine classifiers.

Caragea C, Sinapov J, Silvescu A, Dobbs D, Honavar V.

BMC Bioinformatics. 2007 Nov 9;8:438.PMID: 17996106 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks.

Andrabi M, Mizuguchi K, Sarai A, Ahmad S.

BMC Struct Biol. 2009 May 13;9:30.PMID: 19439068 [PubMed - indexed for MEDLINE]Related articlesFree article

A two-stage classifier for identification of protein-protein interface residues.

Yan C, Dobbs D, Honavar V.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i371-8.PMID: 15262822 [PubMed - indexed for MEDLINE]Related articlesFree article

Using Chou's pseudo amino acid composition based on approximate entropy and an ensemble of AdaBoost classifiers to predict protein subnuclear location.

Jiang X, Wei R, Zhao Y, Zhang T.

Amino Acids. 2008 May;34(4):669-75. Epub 2008 Feb 7.PMID: 18256886 [PubMed - indexed for MEDLINE]Related articles

Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature.

Wu J, Liu H, Duan X, Ding Y, Wu H, Bai Y, Sun X.

Bioinformatics. 2009 Jan 1;25(1):30-5. Epub 2008 Nov 12.PMID: 19008251 [PubMed - indexed for MEDLINE]Related articlesFree article

Estimating residue evolutionary conservation by introducing von Neumann entropy and a novel gap-treating approach.

Zhang SW, Zhang YL, Pan Q, Cheng YM, Chou KC.

Amino Acids. 2008 Aug;35(2):495-501. Epub 2007 Aug 21.PMID: 17710364 [PubMed - indexed for MEDLINE]Related articles

Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein.

Raghava GP, Han JH.

BMC Bioinformatics. 2005 Mar 17;6:59.PMID: 15773999 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational identification of ubiquitylation sites from protein sequences.

Tung CW, Ho SY.

BMC Bioinformatics. 2008 Jul 15;9:310.PMID: 18625080 [PubMed - indexed for MEDLINE]Related articlesFree article

BSFINDER: finding binding sites of HCV proteins using a support vector machine.

Chen Y, Han K.

Protein Pept Lett. 2009;16(4):373-82.PMID: 19356134 [PubMed - indexed for MEDLINE]Related articles

Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information.

Ahmad S, Gromiha MM, Sarai A.

Bioinformatics. 2004 Mar 1;20(4):477-86. Epub 2004 Jan 22.PMID: 14990443 [PubMed - indexed for MEDLINE]Related articlesFree article

Predicting RNA-binding sites of proteins using support vector machines and evolutionary information.

Cheng CW, Su EC, Hwang JK, Sung TY, Hsu WL.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S6.PMID: 19091029 [PubMed - indexed for MEDLINE]Related articlesFree article

Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling.

Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A.

PLoS Comput Biol. 2009 Jan;5(1):e1000267. Epub 2009 Jan 23.PMID: 19165315 [PubMed - indexed for MEDLINE]Related articlesFree article

Domain-based small molecule binding site annotation.

Snyder KA, Feldman HJ, Dumontier M, Salama JJ, Hogue CW.

BMC Bioinformatics. 2006 Mar 17;7:152.PMID: 16545112 [PubMed - indexed for MEDLINE]Related articlesFree article

Sequence-based prediction of protein interaction sites with an integrative method.

Chen XW, Jeong JC.

Bioinformatics. 2009 Mar 1;25(5):585-91. Epub 2009 Jan 19.PMID: 19153136 [PubMed - indexed for MEDLINE]Related articles

Prediction of DNA-binding residues from sequence features.

Wang L, Brown SJ.

J Bioinform Comput Biol. 2006 Dec;4(6):1141-58.PMID: 17245807 [PubMed - indexed for MEDLINE]Related articles