PubMed

Bonneau R, Reiss DJ, Shannon P, Facciotti M, Hood L, Baliga NS, Thorsson V.

Genome Biol. 2006;7(5):R36. Epub 2006 May 10.

Bonneau R, Baliga NS, Deutsch EW, Shannon P, Hood L.

Genome Biol. 2004;5(8):R52. Epub 2004 Jul 12.

Reiss DJ, Baliga NS, Bonneau R.

BMC Bioinformatics. 2006 Jun 2;7:280.

Madar A, Bonneau R.

Methods Mol Biol. 2009;541:181. Review.

Kim SY, Kim Y.

BMC Bioinformatics. 2006 Jul 4;7:330.

Baliga NS, Bjork SJ, Bonneau R, Pan M, Iloanusi C, Kottemann MC, Hood L, DiRuggiero J.

Genome Res. 2004 Jun;14(6):1025-35. Epub 2004 May 12.

Brune I, Werner H, Hüser AT, Kalinowski J, Pühler A, Tauch A.

BMC Genomics. 2006 Feb 9;7:21.

Wichadakul D, McDermott J, Samudrala R.

Methods Mol Biol. 2009;541:101-43. Review.

Carrera J, Rodrigo G, Jaramillo A.

Nucleic Acids Res. 2009 Apr;37(5):e38. Epub 2009 Feb 2.

Coker JA, DasSarma S.

BMC Genet. 2007 Sep 24;8:61.

Gao F, Foat BC, Bussemaker HJ.

BMC Bioinformatics. 2004 Mar 18;5:31.

Kundaje A, Middendorf M, Gao F, Wiggins C, Leslie C.

IEEE/ACM Trans Comput Biol Bioinform. 2005 Jul-Sep;2(3):194-202.

Zare H, Sangurdekar D, Srivastava P, Kaveh M, Khodursky A.

BMC Syst Biol. 2009 Apr 14;3:39.

Bonneau R, Facciotti MT, Reiss DJ, Schmid AK, Pan M, Kaur A, Thorsson V, Shannon P, Johnson MH, Bare JC, Longabaugh W, Vuthoori M, Whitehead K, Madar A, Suzuki L, Mori T, Chang DE, Diruggiero J, Johnson CH, Hood L, Baliga NS.

Cell. 2007 Dec 28;131(7):1354-65.

van den Berg BH, McCarthy FM, Lamont SJ, Burgess SC.

PLoS One. 2010 May 14;5(5):e10642.

Bansal M, Belcastro V, Ambesi-Impiombato A, di Bernardo D.

Mol Syst Biol. 2007;3:78. Epub 2007 Feb 13. Erratum in: Mol Syst Biol. 2007;3:122.

Baliga NS, Pan M, Goo YA, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L.

Proc Natl Acad Sci U S A. 2002 Nov 12;99(23):14913-8. Epub 2002 Oct 28.

Corà D, Herrmann C, Dieterich C, Di Cunto F, Provero P, Caselle M.

BMC Bioinformatics. 2005 May 2;6:110.

Madar A, Greenfield A, Ostrer H, Vanden-Eijnden E, Bonneau R.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:5448-51.

Mehra S, Hu WS, Karypis G.

Metab Eng. 2004 Oct;6(4):326-39.