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    Results: 1 to 20 of 391

    1.

    Influence of metabolic network structure and function on enzyme evolution.

    Vitkup D, Kharchenko P, Wagner A.

    Genome Biol. 2006;7(5):R39. Epub 2006 May 9.

    PMID:
    16684370
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Evolutionary rates and centrality in the yeast gene regulatory network.

    Jovelin R, Phillips PC.

    Genome Biol. 2009;10(4):R35. Epub 2009 Apr 9.

    PMID:
    19358738
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    A network perspective on the evolution of metabolism by gene duplication.

    Díaz-Mejía JJ, Pérez-Rueda E, Segovia L.

    Genome Biol. 2007;8(2):R26.

    PMID:
    17326820
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Preferential attachment in the evolution of metabolic networks.

    Light S, Kraulis P, Elofsson A.

    BMC Genomics. 2005 Nov 10;6:159.

    PMID:
    16281983
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Conservation and topology of protein interaction networks under duplication-divergence evolution.

    Evlampiev K, Isambert H.

    Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9863-8. Epub 2008 Jul 16.

    PMID:
    18632555
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Functional evolution of the yeast protein interaction network.

    Kunin V, Pereira-Leal JB, Ouzounis CA.

    Mol Biol Evol. 2004 Jul;21(7):1171-6. Epub 2004 Apr 7.

    PMID:
    15071090
    [PubMed - indexed for MEDLINE]
    Free Article
    7.

    Molecular evolution in large genetic networks: does connectivity equal constraint?

    Hahn MW, Conant GC, Wagner A.

    J Mol Evol. 2004 Feb;58(2):203-11.

    PMID:
    15042341
    [PubMed - indexed for MEDLINE]
    8.

    Biochemical networking contributes more to genetic buffering in human and mouse metabolic pathways than does gene duplication.

    Kitami T, Nadeau JH.

    Nat Genet. 2002 Sep;32(1):191-4. Epub 2002 Aug 5. Erratum in: Nat Genet 2002 Dec;32(4):681.

    PMID:
    12161750
    [PubMed - indexed for MEDLINE]
    9.
    10.

    Functional and evolutionary inference in gene networks: does topology matter?

    Siegal ML, Promislow DE, Bergman A.

    Genetica. 2007 Jan;129(1):83-103. Epub 2006 Aug 8.

    PMID:
    16897451
    [PubMed - indexed for MEDLINE]
    11.

    Protein evolution on a human signaling network.

    Cui Q, Purisima EO, Wang E.

    BMC Syst Biol. 2009 Feb 18;3:21.

    PMID:
    19226461
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Modeling protein network evolution under genome duplication and domain shuffling.

    Evlampiev K, Isambert H.

    BMC Syst Biol. 2007 Nov 13;1:49.

    PMID:
    17999763
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication.

    Presser A, Elowitz MB, Kellis M, Kishony R.

    Proc Natl Acad Sci U S A. 2008 Jan 22;105(3):950-4. Epub 2008 Jan 16.

    PMID:
    18199840
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    How the global structure of protein interaction networks evolves.

    Wagner A.

    Proc Biol Sci. 2003 Mar 7;270(1514):457-66.

    PMID:
    12641899
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications.

    Berg J, Lässig M, Wagner A.

    BMC Evol Biol. 2004 Nov 27;4:51.

    PMID:
    15566577
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast.

    Papp B, Pál C, Hurst LD.

    Nature. 2004 Jun 10;429(6992):661-4.

    PMID:
    15190353
    [PubMed - indexed for MEDLINE]
    17.

    Evolutionary rate in the protein interaction network.

    Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C, Feldman MW.

    Science. 2002 Apr 26;296(5568):750-2.

    PMID:
    11976460
    [PubMed - indexed for MEDLINE]
    18.

    Latent pathway activation and increased pathway capacity enable Escherichia coli adaptation to loss of key metabolic enzymes.

    Fong SS, Nanchen A, Palsson BO, Sauer U.

    J Biol Chem. 2006 Mar 24;281(12):8024-33. Epub 2005 Nov 30.

    PMID:
    16319065
    [PubMed - indexed for MEDLINE]
    Free Article
    19.

    The effects of incomplete protein interaction data on structural and evolutionary inferences.

    de Silva E, Thorne T, Ingram P, Agrafioti I, Swire J, Wiuf C, Stumpf MP.

    BMC Biol. 2006 Nov 3;4:39.

    PMID:
    17081312
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast.

    Gresham D, Desai MM, Tucker CM, Jenq HT, Pai DA, Ward A, DeSevo CG, Botstein D, Dunham MJ.

    PLoS Genet. 2008 Dec;4(12):e1000303. Epub 2008 Dec 12.

    PMID:
    19079573
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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