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    Results: 1 to 20 of 123

    1.

    Network motifs: structure does not determine function.

    Ingram PJ, Stumpf MP, Stark J.

    BMC Genomics. 2006 May 5;7:108.PMID: 16677373 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach.

    Ma HW, Buer J, Zeng AP.

    BMC Bioinformatics. 2004 Dec 16;5:199.PMID: 15603590 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Control of transcriptional variability by overlapping feed-forward regulatory motifs.

    Ratushny AV, Ramsey SA, Roda O, Wan Y, Smith JJ, Aitchison JD.

    Biophys J. 2008 Oct;95(8):3715-23. Epub 2008 Jul 11.PMID: 18621837 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Evolutionary models for formation of network motifs and modularity in the Saccharomyces transcription factor network.

    Ward JJ, Thornton JM.

    PLoS Comput Biol. 2007 Oct;3(10):1993-2002. Epub 2007 Aug 27.PMID: 17967049 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network.

    Zhang LV, King OD, Wong SL, Goldberg DS, Tong AH, Lesage G, Andrews B, Bussey H, Boone C, Roth FP.

    J Biol. 2005;4(2):6. Epub 2005 Jun 1.PMID: 15982408 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Phenotype analysis using network motifs derived from changes in regulatory network dynamics.

    Cavelier G, Anastassiou D.

    Proteins. 2005 Aug 15;60(3):525-46.PMID: 15971229 [PubMed - indexed for MEDLINE]Related articles

    7.

    A microarray data-based semi-kinetic method for predicting quantitative dynamics of genetic networks.

    Yugi K, Nakayama Y, Kojima S, Kitayama T, Tomita M.

    BMC Bioinformatics. 2005 Dec 13;6:299.PMID: 16351711 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Cellular automata simulation of topological effects on the dynamics of feed-forward motifs.

    Apte AA, Cain JW, Bonchev DG, Fong SS.

    J Biol Eng. 2008 Feb 27;2:2.PMID: 18304325 [PubMed - in process]Related articlesFree article

    9.

    Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast.

    Balaji S, Babu MM, Iyer LM, Luscombe NM, Aravind L.

    J Mol Biol. 2006 Jun 30;360(1):213-27. Epub 2006 May 3.PMID: 16762362 [PubMed - indexed for MEDLINE]Related articles

    10.

    Network motif identification in stochastic networks.

    Jiang R, Tu Z, Chen T, Sun F.

    Proc Natl Acad Sci U S A. 2006 Jun 20;103(25):9404-9. Epub 2006 Jun 12.PMID: 16769903 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Identifying promoter features of co-regulated genes with similar network motifs.

    Harari O, del Val C, Romero-Zaliz R, Shin D, Huang H, Groisman EA, Zwir I.

    BMC Bioinformatics. 2009 Apr 29;10 Suppl 4:S1.PMID: 19426448 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    A copula method for modeling directional dependence of genes.

    Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

    BMC Bioinformatics. 2008 May 1;9:225.PMID: 18447957 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Bridge and brick network motifs: identifying significant building blocks from complex biological systems.

    Huang CY, Cheng CY, Sun CT.

    Artif Intell Med. 2007 Oct;41(2):117-27. Epub 2007 Sep 7.PMID: 17825540 [PubMed - indexed for MEDLINE]Related articles

    14.

    Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation.

    Westholm JO, Xu F, Ronne H, Komorowski J.

    BMC Bioinformatics. 2008 Nov 17;9:484.PMID: 19014636 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Dynamic cumulative activity of transcription factors as a mechanism of quantitative gene regulation.

    He F, Buer J, Zeng AP, Balling R.

    Genome Biol. 2007;8(9):R181.PMID: 17784952 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network.

    Dobrin R, Beg QK, Barabási AL, Oltvai ZN.

    BMC Bioinformatics. 2004 Jan 30;5:10.PMID: 15018656 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Generating confidence intervals on biological networks.

    Thorne T, Stumpf MP.

    BMC Bioinformatics. 2007 Nov 30;8:467.PMID: 18053130 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture.

    Jothi R, Balaji S, Wuster A, Grochow JA, Gsponer J, Przytycka TM, Aravind L, Babu MM.

    Mol Syst Biol. 2009;5:294. Epub 2009 Aug 18.PMID: 19690563 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Expression dynamics of a cellular metabolic network.

    Kharchenko P, Church GM, Vitkup D.

    Mol Syst Biol. 2005;1:2005.0016. Epub 2005 Aug 2.PMID: 16729051 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Discovering novel cis-regulatory motifs using functional networks.

    Ettwiller LM, Rung J, Birney E.

    Genome Res. 2003 May;13(5):883-95.PMID: 12727907 [PubMed - indexed for MEDLINE]Related articlesFree article

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