PubMed

Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets.

Aubry M, Monnier A, Chicault C, de Tayrac M, Galibert MD, Burgun A, Mosser J.

BMC Bioinformatics. 2006 May 4;7:241.PMID: 16674810 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

BMC Bioinformatics. 2007 Jul 10;8:243.PMID: 17620146 [PubMed - indexed for MEDLINE]Related articlesFree article

A new measure for functional similarity of gene products based on Gene Ontology.

Schlicker A, Domingues FS, Rahnenführer J, Lengauer T.

BMC Bioinformatics. 2006 Jun 15;7:302.PMID: 16776819 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143.PMID: 18325104 [PubMed - indexed for MEDLINE]Related articlesFree article

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.PMID: 15661078 [PubMed - indexed for MEDLINE]Related articlesFree article

Assessment of disease named entity recognition on a corpus of annotated sentences.

Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S3.PMID: 18426548 [PubMed - indexed for MEDLINE]Related articlesFree article

Non-lexical approaches to identifying associative relations in the gene ontology.

Bodenreider O, Aubry M, Burgun A.

Pac Symp Biocomput. 2005:91-102.PMID: 15759617 [PubMed - indexed for MEDLINE]Related articlesFree article

Corpus annotation for mining biomedical events from literature.

Kim JD, Ohta T, Tsujii J.

BMC Bioinformatics. 2008 Jan 8;9:10.PMID: 18182099 [PubMed - indexed for MEDLINE]Related articlesFree article

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.PMID: 15960829 [PubMed - indexed for MEDLINE]Related articlesFree article

Evaluation of BioCreAtIvE assessment of task 2.

Blaschke C, Leon EA, Krallinger M, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S16. Epub 2005 May 24.PMID: 15960828 [PubMed - indexed for MEDLINE]Related articlesFree article

Identifying biological concepts from a protein-related corpus with a probabilistic topic model.

Zheng B, McLean DC Jr, Lu X.

BMC Bioinformatics. 2006 Feb 8;7:58.PMID: 16466569 [PubMed - indexed for MEDLINE]Related articlesFree article

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.

Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D262-6.PMID: 14681408 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae.

Meng S, Brown DE, Ebbole DJ, Torto-Alalibo T, Oh YY, Deng J, Mitchell TK, Dean RA.

BMC Microbiol. 2009 Feb 19;9 Suppl 1:S8. Review.PMID: 19278556 [PubMed - indexed for MEDLINE]Related articlesFree article

Text mining biomedical literature for discovering gene-to-gene relationships: a comparative study of algorithms.

Liu Y, Navathe SB, Civera J, Dasigi V, Ram A, Ciliax BJ, Dingledine R.

IEEE/ACM Trans Comput Biol Bioinform. 2005 Jan-Mar;2(1):62-76.PMID: 17044165 [PubMed - indexed for MEDLINE]Related articles

Get ready to GO! A biologist's guide to the Gene Ontology.

Lomax J.

Brief Bioinform. 2005 Sep;6(3):298-304. Review.PMID: 16212777 [PubMed - indexed for MEDLINE]Related articlesFree article

A transversal approach to predict gene product networks from ontology-based similarity.

Chabalier J, Mosser J, Burgun A.

BMC Bioinformatics. 2007 Jul 2;8:235.PMID: 17605807 [PubMed - indexed for MEDLINE]Related articlesFree article

Literature-based concept profiles for gene annotation: the issue of weighting.

Jelier R, Schuemie MJ, Roes PJ, van Mulligen EM, Kors JA.

Int J Med Inform. 2008 May;77(5):354-62. Epub 2007 Sep 10.PMID: 17827057 [PubMed - indexed for MEDLINE]Related articles

Combining hierarchical and associative gene ontology relations with textual evidence in estimating gene and gene product similarity.

Sanfilippo A, Posse C, Gopalan B, Riensche R, Beagley N, Baddeley B, Tratz S, Gregory M.

IEEE Trans Nanobioscience. 2007 Mar;6(1):51-9.PMID: 17393850 [PubMed - indexed for MEDLINE]Related articles

GOChase: correcting errors from Gene Ontology-based annotations for gene products.

Park YR, Park CH, Kim JH.

Bioinformatics. 2005 Mar;21(6):829-31. Epub 2004 Oct 28.PMID: 15513987 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome wide prediction of protein function via a generic knowledge discovery approach based on evidence integration.

Xiong J, Rayner S, Luo K, Li Y, Chen S.

BMC Bioinformatics. 2006 May 25;7:268.PMID: 16725034 [PubMed - indexed for MEDLINE]Related articlesFree article