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Results: 1 to 20 of 96

1.

Improved method for predicting linear B-cell epitopes.

Larsen JE, Lund O, Nielsen M.

Immunome Res. 2006 Apr 24;2:2.PMID: 16635264 [PubMed]Related articlesFree article

2.

Predicting linear B-cell epitopes using string kernels.

El-Manzalawy Y, Dobbs D, Honavar V.

J Mol Recognit. 2008 Jul-Aug;21(4):243-55.PMID: 18496882 [PubMed - indexed for MEDLINE]Related articlesFree article

3.

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction.

Larsen MV, Lundegaard C, Lamberth K, Buus S, Lund O, Nielsen M.

BMC Bioinformatics. 2007 Oct 31;8:424.PMID: 17973982 [PubMed - indexed for MEDLINE]Related articlesFree article

4.

An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions.

Larsen MV, Lundegaard C, Lamberth K, Buus S, Brunak S, Lund O, Nielsen M.

Eur J Immunol. 2005 Aug;35(8):2295-303.PMID: 15997466 [PubMed - indexed for MEDLINE]Related articles

5.

Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis.

Huang YX, Bao YL, Guo SY, Wang Y, Zhou CG, Li YX.

BMC Bioinformatics. 2008 Dec 16;9:538.PMID: 19087303 [PubMed - indexed for MEDLINE]Related articlesFree article

6.

Predicting B cell epitope residues with network topology based amino acid indices.

Huang J, Honda W, Kanehisa M.

Genome Inform. 2007;19:40-9.PMID: 18546503 [PubMed - indexed for MEDLINE]Related articlesFree article

7.

Prediction of continuous B-cell epitopes in an antigen using recurrent neural network.

Saha S, Raghava GP.

Proteins. 2006 Oct 1;65(1):40-8.PMID: 16894596 [PubMed - indexed for MEDLINE]Related articles

8.

Predicting flexible length linear B-cell epitopes.

El-Manzalawy Y, Dobbs D, Honavar V.

Comput Syst Bioinformatics Conf. 2008;7:121-32.PMID: 19642274 [PubMed - indexed for MEDLINE]Related articles

9.

Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research.

Lin HH, Zhang GL, Tongchusak S, Reinherz EL, Brusic V.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S22.PMID: 19091022 [PubMed - indexed for MEDLINE]Related articlesFree article

10.

Searching and mapping of B-cell epitopes in Bcipep database.

Saha S, Raghava GP.

Methods Mol Biol. 2007;409:113-24.PMID: 18449995 [PubMed - indexed for MEDLINE]Related articles

11.

Recent developments with B-cell epitope identification for predictive studies.

Roggen EL.

J Immunotoxicol. 2006 Sep 1;3(3):137-49.PMID: 18958694 [PubMed - in process]Related articles

12.

Estimation and extraction of B-cell linear epitopes predicted by mathematical morphology approaches.

Chang HT, Liu CH, Pai TW.

J Mol Recognit. 2008 Nov-Dec;21(6):431-41.PMID: 18680207 [PubMed - indexed for MEDLINE]Related articles

13.

Mutational pressure makes HIV1 gp120 linear B-cell epitopes shorter and may lead to their disappearance.

Khrustalev VV.

Mol Immunol. 2010 Feb 1. [Epub ahead of print]PMID: 20129670 [PubMed - as supplied by publisher]Related articles

14.

Prediction of nuclear proteins using SVM and HMM models.

Kumar M, Raghava GP.

BMC Bioinformatics. 2009 Jan 19;10:22.PMID: 19152693 [PubMed - indexed for MEDLINE]Related articlesFree article

15.

Antibody-protein interactions: benchmark datasets and prediction tools evaluation.

Ponomarenko JV, Bourne PE.

BMC Struct Biol. 2007 Oct 2;7:64.PMID: 17910770 [PubMed - indexed for MEDLINE]Related articlesFree article

16.

Prediction of residues in discontinuous B-cell epitopes using protein 3D structures.

Haste Andersen P, Nielsen M, Lund O.

Protein Sci. 2006 Nov;15(11):2558-67. Epub 2006 Sep 25.PMID: 17001032 [PubMed - indexed for MEDLINE]Related articlesFree article

17.

AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data.

Toseland CP, Clayton DJ, McSparron H, Hemsley SL, Blythe MJ, Paine K, Doytchinova IA, Guan P, Hattotuwagama CK, Flower DR.

Immunome Res. 2005 Oct 6;1(1):4.PMID: 16305757 [PubMed]Related articlesFree article

18.

Toward the prediction of class I and II mouse major histocompatibility complex-peptide-binding affinity: in silico bioinformatic step-by-step guide using quantitative structure-activity relationships.

Hattotuwagama CK, Doytchinova IA, Flower DR.

Methods Mol Biol. 2007;409:227-45.PMID: 18450004 [PubMed - indexed for MEDLINE]Related articles

19.

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11.

Lundegaard C, Lamberth K, Harndahl M, Buus S, Lund O, Nielsen M.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W509-12. Epub 2008 May 7.PMID: 18463140 [PubMed - indexed for MEDLINE]Related articlesFree article

20.

Analysis and prediction of protective continuous B-cell epitopes on pathogen proteins.

Sollner J, Grohmann R, Rapberger R, Perco P, Lukas A, Mayer B.

Immunome Res. 2008 Jan 7;4:1.PMID: 18179690 [PubMed - in process]Related articlesFree article

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