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    Results: 1 to 20 of 678

    1.

    Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins.

    Hesselberth JR, Miller JP, Golob A, Stajich JE, Michaud GA, Fields S.

    Genome Biol. 2006;7(4):R30. Epub 2006 Apr 10.

    PMID:
    16606443
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Solution structure and ligand recognition of the WW domain pair of the yeast splicing factor Prp40.

    Wiesner S, Stier G, Sattler M, Macias MJ.

    J Mol Biol. 2002 Dec 6;324(4):807-22.

    PMID:
    12460579
    [PubMed - indexed for MEDLINE]
    3.

    GAIA: a gram-based interaction analysis tool--an approach for identifying interacting domains in yeast.

    Zhang KX, Ouellette BF.

    BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S60.

    PMID:
    19208164
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    WW domains provide a platform for the assembly of multiprotein networks.

    Ingham RJ, Colwill K, Howard C, Dettwiler S, Lim CS, Yu J, Hersi K, Raaijmakers J, Gish G, Mbamalu G, Taylor L, Yeung B, Vassilovski G, Amin M, Chen F, Matskova L, Winberg G, Ernberg I, Linding R, O'donnell P, Starostine A, Keller W, Metalnikov P, Stark C, Pawson T.

    Mol Cell Biol. 2005 Aug;25(16):7092-106.

    PMID:
    16055720
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions.

    Jothi R, Cherukuri PF, Tasneem A, Przytycka TM.

    J Mol Biol. 2006 Sep 29;362(4):861-75. Epub 2006 Aug 1.

    PMID:
    16949097
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Conserved network motifs allow protein-protein interaction prediction.

    Albert I, Albert R.

    Bioinformatics. 2004 Dec 12;20(18):3346-52. Epub 2004 Jul 9.

    PMID:
    15247093
    [PubMed - indexed for MEDLINE]
    Free Article
    7.

    On the detection of functionally coherent groups of protein domains with an extension to protein annotation.

    McLaughlin WA, Chen K, Hou T, Wang W.

    BMC Bioinformatics. 2007 Oct 16;8:390.

    PMID:
    17937820
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Characterizing Class I WW domains defines key specificity determinants and generates mutant domains with novel specificities.

    Kasanov J, Pirozzi G, Uveges AJ, Kay BK.

    Chem Biol. 2001 Mar;8(3):231-41.

    PMID:
    11306348
    [PubMed - indexed for MEDLINE]
    9.

    A map of WW domain family interactions.

    Hu H, Columbus J, Zhang Y, Wu D, Lian L, Yang S, Goodwin J, Luczak C, Carter M, Chen L, James M, Davis R, Sudol M, Rodwell J, Herrero JJ.

    Proteomics. 2004 Mar;4(3):643-55.

    PMID:
    14997488
    [PubMed - indexed for MEDLINE]
    10.

    Characterization of the WW domain of human yes-associated protein and its polyproline-containing ligands.

    Chen HI, Einbond A, Kwak SJ, Linn H, Koepf E, Peterson S, Kelly JW, Sudol M.

    J Biol Chem. 1997 Jul 4;272(27):17070-7.

    PMID:
    9202023
    [PubMed - indexed for MEDLINE]
    Free Article
    11.

    Comparative structural and energetic analysis of WW domain-peptide interactions.

    Schleinkofer K, Wiedemann U, Otte L, Wang T, Krause G, Oschkinat H, Wade RC.

    J Mol Biol. 2004 Nov 26;344(3):865-81.

    PMID:
    15533451
    [PubMed - indexed for MEDLINE]
    12.

    Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins.

    Tonikian R, Xin X, Toret CP, Gfeller D, Landgraf C, Panni S, Paoluzi S, Castagnoli L, Currell B, Seshagiri S, Yu H, Winsor B, Vidal M, Gerstein MB, Bader GD, Volkmer R, Cesareni G, Drubin DG, Kim PM, Sidhu SS, Boone C.

    PLoS Biol. 2009 Oct;7(10):e1000218. Epub 2009 Oct 20.

    PMID:
    19841731
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    GYF domain proteomics reveals interaction sites in known and novel target proteins.

    Kofler M, Motzny K, Freund C.

    Mol Cell Proteomics. 2005 Nov;4(11):1797-811. Epub 2005 Aug 23.

    PMID:
    16120600
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Rsp5 WW domains interact directly with the carboxyl-terminal domain of RNA polymerase II.

    Chang A, Cheang S, Espanel X, Sudol M.

    J Biol Chem. 2000 Jul 7;275(27):20562-71.

    PMID:
    10781604
    [PubMed - indexed for MEDLINE]
    Free Article
    15.

    A neural strategy for the inference of SH3 domain-peptide interaction specificity.

    Ferraro E, Via A, Ausiello G, Helmer-Citterich M.

    BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S13.

    PMID:
    16351739
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Solution structure of the orphan PABC domain from Saccharomyces cerevisiae poly(A)-binding protein.

    Kozlov G, Siddiqui N, Coillet-Matillon S, Trempe JF, Ekiel I, Sprules T, Gehring K.

    J Biol Chem. 2002 Jun 21;277(25):22822-8. Epub 2002 Apr 8.

    PMID:
    11940585
    [PubMed - indexed for MEDLINE]
    Free Article
    18.

    The structure of Prp40 FF1 domain and its interaction with the crn-TPR1 motif of Clf1 gives a new insight into the binding mode of FF domains.

    Gasch A, Wiesner S, Martin-Malpartida P, Ramirez-Espain X, Ruiz L, Macias MJ.

    J Biol Chem. 2006 Jan 6;281(1):356-64. Epub 2005 Oct 27.

    PMID:
    16253993
    [PubMed - indexed for MEDLINE]
    Free Article
    19.

    Statistical analysis of domains in interacting protein pairs.

    Nye TM, Berzuini C, Gilks WR, Babu MM, Teichmann SA.

    Bioinformatics. 2005 Apr 1;21(7):993-1001. Epub 2004 Oct 27.

    PMID:
    15509600
    [PubMed - indexed for MEDLINE]
    Free Article
    20.

    A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules.

    Tong AH, Drees B, Nardelli G, Bader GD, Brannetti B, Castagnoli L, Evangelista M, Ferracuti S, Nelson B, Paoluzi S, Quondam M, Zucconi A, Hogue CW, Fields S, Boone C, Cesareni G.

    Science. 2002 Jan 11;295(5553):321-4. Epub 2001 Dec 13.

    PMID:
    11743162
    [PubMed - indexed for MEDLINE]

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