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    Results: 1 to 20 of 547

    1.

    A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.

    Fan W, Khalid N, Hallahan AR, Olson JM, Zhao LP.

    Theor Biol Med Model. 2006 Apr 7;3:19.PMID: 16603076 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation.

    Ha KCh, Coulombe-Huntington J, Majewski J.

    BMC Genomics. 2009 Nov 12;10:519.PMID: 19909511 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays.

    Yoshida R, Numata K, Imoto S, Nagasaki M, Doi A, Ueno K, Miyano S.

    Genome Inform. 2006;17(1):88-99.PMID: 17503359 [PubMed - indexed for MEDLINE]Related articles

    4.

    Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.

    Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y.

    BMC Genomics. 2006 Dec 27;7:325.PMID: 17192196 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Prediction of alternatively skipped exons and splicing enhancers from exon junction arrays.

    Kechris K, Yang YH, Yeh RF.

    BMC Genomics. 2008 Nov 20;9:551.PMID: 19021909 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Predicting splice variant from DNA chip expression data.

    Hu GK, Madore SJ, Moldover B, Jatkoe T, Balaban D, Thomas J, Wang Y.

    Genome Res. 2001 Jul;11(7):1237-45.PMID: 11435406 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Gene expression and isoform variation analysis using Affymetrix Exon Arrays.

    Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.

    BMC Genomics. 2008 Nov 7;9:529. Erratum in: BMC Genomics. 2009 Mar 23;10. doi: 10.1186/1471-2164-10-121. PMID: 18990248 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates.

    Walker SJ, Wang Y, Grant KA, Chan F, Hellmann GM.

    J Neurosci Methods. 2006 Apr 15;152(1-2):179-89. Epub 2005 Oct 25.PMID: 16253343 [PubMed - indexed for MEDLINE]Related articles

    9.

    Transcript-specific expression profiles derived from sequence-based analysis of standard microarrays.

    Moll AG, Lindenmeyer MT, Kretzler M, Nelson PJ, Zimmer R, Cohen CD.

    PLoS One. 2009;4(3):e4702. Epub 2009 Mar 11.PMID: 19277110 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.

    Sásik R, Calvo E, Corbeil J.

    Bioinformatics. 2002 Dec;18(12):1633-40.PMID: 12490448 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    MMBGX: a method for estimating expression at the isoform level and detecting differential splicing using whole-transcript Affymetrix arrays.

    Turro E, Lewin A, Rose A, Dallman MJ, Richardson S.

    Nucleic Acids Res. 2010 Jan;38(1):e4. Epub 2009 Oct 23.PMID: 19854940 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Utilization of two sample t-test statistics from redundant probe sets to evaluate different probe set algorithms in GeneChip studies.

    Hu Z, Willsky GR.

    BMC Bioinformatics. 2006 Jan 10;7:12.PMID: 16403228 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity.

    Zhou W, Calciano MA, Jordan H, Brenner M, Johnson S, Wu D, Lei L, Pallares D, Beurdeley P, Rouet F, Gill PS, Bracco L, Soucaille C, Einstein R.

    BMC Genet. 2009 Oct 5;10:63.PMID: 19804644 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Discovery of tissue-specific exons using comprehensive human exon microarrays.

    Clark TA, Schweitzer AC, Chen TX, Staples MK, Lu G, Wang H, Williams A, Blume JE.

    Genome Biol. 2007;8(4):R64.PMID: 17456239 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.

    Alberts R, Terpstra P, Hardonk M, Bystrykh LV, de Haan G, Breitling R, Nap JP, Jansen RC.

    BMC Bioinformatics. 2007 Apr 20;8:132.PMID: 17448222 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Probe selection and expression index computation of Affymetrix Exon Arrays.

    Xing Y, Kapur K, Wong WH.

    PLoS One. 2006 Dec 20;1:e88.PMID: 17183719 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.

    Carter SL, Eklund AC, Mecham BH, Kohane IS, Szallasi Z.

    BMC Bioinformatics. 2005 Apr 25;6:107.PMID: 15850491 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    REMAS: a new regression model to identify alternative splicing events from exon array data.

    Zheng H, Hang X, Zhu J, Qian M, Qu W, Zhang C, Deng M.

    BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S18.PMID: 19208117 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection.

    Graham NS, Broadley MR, Hammond JP, White PJ, May ST.

    BMC Genomics. 2007 Oct 1;8:344.PMID: 17908303 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Inferring global levels of alternative splicing isoforms using a generative model of microarray data.

    Shai O, Morris QD, Blencowe BJ, Frey BJ.

    Bioinformatics. 2006 Mar 1;22(5):606-13. Epub 2006 Jan 10.PMID: 16403798 [PubMed - indexed for MEDLINE]Related articlesFree article

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