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A survey of motif discovery methods in an integrated framework.

Sandve GK, Drabløs F.

Biol Direct. 2006 Apr 6;1:11.PMID: 16600018 [PubMed]Free PMC ArticleFree textRelated citations

A survey of DNA motif finding algorithms.

Das MK, Dai HK.

BMC Bioinformatics. 2007 Nov 1;8 Suppl 7:S21. Review.PMID: 18047721 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Assessment of composite motif discovery methods.

Klepper K, Sandve GK, Abul O, Johansen J, Drablos F.

BMC Bioinformatics. 2008 Feb 26;9:123.PMID: 18302777 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

A joint finite mixture model for clustering genes from independent Gaussian and beta distributed data.

Dai X, Erkkilä T, Yli-Harja O, Lähdesmäki H.

BMC Bioinformatics. 2009 May 29;10:165.PMID: 19480678 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Discovering motifs in ranked lists of DNA sequences.

Eden E, Lipson D, Yogev S, Yakhini Z.

PLoS Comput Biol. 2007 Mar 23;3(3):e39.PMID: 17381235 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Comparative analysis of regulatory motif discovery tools for transcription factor binding sites.

Wei W, Yu XD.

Genomics Proteomics Bioinformatics. 2007 May;5(2):131-42.PMID: 17893078 [PubMed - indexed for MEDLINE]Related citations

Improved benchmarks for computational motif discovery.

Sandve GK, Abul O, Walseng V, Drabløs F.

BMC Bioinformatics. 2007 Jun 8;8:193.PMID: 17559676 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Safety and nutritional assessment of GM plants and derived food and feed: the role of animal feeding trials.

EFSA GMO Panel Working Group on Animal Feeding Trials.

Food Chem Toxicol. 2008 Mar;46 Suppl 1:S2-70. Epub 2008 Feb 13. Review.PMID: 18328408 [PubMed - indexed for MEDLINE]Related citations

Motif-directed network component analysis for regulatory network inference.

Wang C, Xuan J, Chen L, Zhao P, Wang Y, Clarke R, Hoffman E.

BMC Bioinformatics. 2008;9 Suppl 1:S21.PMID: 18315853 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Computational identification of transcriptional regulatory elements in DNA sequence.

GuhaThakurta D.

Nucleic Acids Res. 2006 Jul 19;34(12):3585-98. Print 2006. Review.PMID: 16855295 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

In silico discovery of transcription regulatory elements in Plasmodium falciparum.

Young JA, Johnson JR, Benner C, Yan SF, Chen K, Le Roch KG, Zhou Y, Winzeler EA.

BMC Genomics. 2008 Feb 7;9:70.PMID: 18257930 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

A transdimensional Bayesian model for pattern recognition in DNA sequences.

Li SM, Wakefield J, Self S.

Biostatistics. 2008 Oct;9(4):668-85. Epub 2008 Mar 18.PMID: 18349034 [PubMed - indexed for MEDLINE]Related citations

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R.

BMC Bioinformatics. 2008 Oct 6;9:416.PMID: 18837990 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing.

Larsson E, Lindahl P, Mostad P.

BMC Bioinformatics. 2007 Oct 28;8:418.PMID: 17963524 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

An improved Gibbs sampling method for motif discovery via sequence weighting.

Chen X, Jiang T.

Comput Syst Bioinformatics Conf. 2006:239-47.PMID: 17369642 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

How to reduce false positive results when undertaking in vitro genotoxicity testing and thus avoid unnecessary follow-up animal tests: Report of an ECVAM Workshop.

Kirkland D, Pfuhler S, Tweats D, Aardema M, Corvi R, Darroudi F, Elhajouji A, Glatt H, Hastwell P, Hayashi M, Kasper P, Kirchner S, Lynch A, Marzin D, Maurici D, Meunier JR, Müller L, Nohynek G, Parry J, Parry E, Thybaud V, Tice R, van Benthem J, Vanparys P, White P.

Mutat Res. 2007 Mar 30;628(1):31-55. Epub 2007 Jan 13.PMID: 17293159 [PubMed - indexed for MEDLINE]Related citations

Using iterative cluster merging with improved gap statistics to perform online phenotype discovery in the context of high-throughput RNAi screens.

Yin Z, Zhou X, Bakal C, Li F, Sun Y, Perrimon N, Wong ST.

BMC Bioinformatics. 2008 Jun 5;9:264.PMID: 18534020 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves.

Berendzen KW, Stüber K, Harter K, Wanke D.

BMC Bioinformatics. 2006 Nov 30;7:522.PMID: 17137509 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs.

Kato M, Tsunoda T.

BMC Bioinformatics. 2007 Mar 22;8:100.PMID: 17378935 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

[Procedures and methods of benefit assessments for medicines in Germany]

Bekkering GE, Kleijnen J.

Dtsch Med Wochenschr. 2008 Dec;133 Suppl 7:S225-46. Epub 2008 Nov 25. German. PMID: 19034813 [PubMed - indexed for MEDLINE]Related citations