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    Results: 1 to 20 of 122

    1.

    Reference based annotation with GeneMapper.

    Chatterji S, Pachter L.

    Genome Biol. 2006;7(4):R29. Epub 2006 Apr 5.PMID: 16600017 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Improving genome annotations using phylogenetic profile anomaly detection.

    Mikkelsen TS, Galagan JE, Mesirov JP.

    Bioinformatics. 2005 Feb 15;21(4):464-70. Epub 2004 Sep 16.PMID: 15374867 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome.

    Tcherepanov V, Ehlers A, Upton C.

    BMC Genomics. 2006 Jun 13;7:150.PMID: 16772042 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome.

    Christoffels A, Bartfai R, Srinivasan H, Komen H, Orban L.

    BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S2.PMID: 17254304 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Finding genes in Schistosoma japonicum: annotating novel genomes with help of extrinsic evidence.

    Brejová B, Vinar T, Chen Y, Wang S, Zhao G, Brown DG, Li M, Zhou Y.

    Nucleic Acids Res. 2009 Apr;37(7):e52. Epub 2009 Mar 5.PMID: 19264800 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms.

    Sinha AU, Meller J.

    BMC Bioinformatics. 2007 Mar 8;8:82.PMID: 17343765 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.

    Parra G, Bradnam K, Korf I.

    Bioinformatics. 2007 May 1;23(9):1061-7. Epub 2007 Mar 1.PMID: 17332020 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Clustering of main orthologs for multiple genomes.

    Fu Z, Jiang T.

    Comput Syst Bioinformatics Conf. 2007;6:195-201.PMID: 17951824 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Matching curated genome databases: a non trivial task.

    Descorps-Declère S, Barba M, Labedan B.

    BMC Genomics. 2008 Oct 24;9:501.PMID: 18950477 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    G-InforBIO: integrated system for microbial genomics.

    Tanaka N, Abe T, Miyazaki S, Sugawara H.

    BMC Bioinformatics. 2006 Aug 4;7:368.PMID: 16887044 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Restauro-G: a rapid genome re-annotation system for comparative genomics.

    Tamaki S, Arakawa K, Kono N, Tomita M.

    Genomics Proteomics Bioinformatics. 2007 Feb;5(1):53-8.PMID: 17572364 [PubMed - indexed for MEDLINE]Related articles

    12.

    EGASP: the human ENCODE Genome Annotation Assessment Project.

    Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG.

    Genome Biol. 2006;7 Suppl 1:S2.1-31. Epub 2006 Aug 7. Review.PMID: 16925836 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Clustering of main orthologs for multiple genomes.

    Fu Z, Jiang T.

    J Bioinform Comput Biol. 2008 Jun;6(3):573-84.PMID: 18574863 [PubMed - indexed for MEDLINE]Related articles

    14.

    PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.

    Hanekamp K, Bohnebeck U, Beszteri B, Valentin K.

    Bioinformatics. 2007 Apr 1;23(7):793-801. Epub 2007 Mar 1.PMID: 17332025 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Large-scale prokaryotic gene prediction and comparison to genome annotation.

    Nielsen P, Krogh A.

    Bioinformatics. 2005 Dec 15;21(24):4322-9. Epub 2005 Oct 25.PMID: 16249266 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    PILER: identification and classification of genomic repeats.

    Edgar RC, Myers EW.

    Bioinformatics. 2005 Jun;21 Suppl 1:i152-8.PMID: 15961452 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

    Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW.

    Nucleic Acids Res. 2007;35(9):3100-8. Epub 2007 Apr 22.PMID: 17452365 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes.

    Mignone F, Anselmo A, Donvito G, Maggi GP, Grillo G, Pesole G.

    BMC Genomics. 2008 Jun 11;9:277.PMID: 18547402 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence.

    Gotoh O.

    Nucleic Acids Res. 2008 May;36(8):2630-8. Epub 2008 Mar 15.PMID: 18344523 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

    Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

    BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

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