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GAIA: an easy-to-use web-based application for interaction analysis of case-control data.

Macgregor S, Khan IA.

BMC Med Genet. 2006 Apr 5;7:34.PMID: 16595019 [PubMed - indexed for MEDLINE]Related articlesFree article

An ensemble learning approach jointly modeling main and interaction effects in genetic association studies.

Zhang Z, Zhang S, Wong MY, Wareham NJ, Sha Q.

Genet Epidemiol. 2008 May;32(4):285-300.PMID: 18205210 [PubMed - indexed for MEDLINE]Related articles

PRESTO: rapid calculation of order statistic distributions and multiple-testing adjusted P-values via permutation for one and two-stage genetic association studies.

Browning BL.

BMC Bioinformatics. 2008 Jul 13;9:309.PMID: 18620604 [PubMed - indexed for MEDLINE]Related articlesFree article

Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genome-wide association studies.

Ma L, Runesha HB, Dvorkin D, Garbe JR, Da Y.

BMC Bioinformatics. 2008 Jul 21;9:315.PMID: 18644146 [PubMed - indexed for MEDLINE]Related articlesFree article

An entropy-based approach for testing genetic epistasis underlying complex diseases.

Kang G, Yue W, Zhang J, Cui Y, Zuo Y, Zhang D.

J Theor Biol. 2008 Jan 21;250(2):362-74. Epub 2007 Oct 6.PMID: 17996908 [PubMed - indexed for MEDLINE]Related articles

A method for detecting epistasis in genome-wide studies using case-control multi-locus association analysis.

Gayán J, González-Pérez A, Bermudo F, Sáez ME, Royo JL, Quintas A, Galan JJ, Morón FJ, Ramirez-Lorca R, Real LM, Ruiz A.

BMC Genomics. 2008 Jul 31;9:360.PMID: 18667089 [PubMed - indexed for MEDLINE]Related articlesFree article

Identifying quantitative trait locus by genetic background interactions in association studies.

Jannink JL.

Genetics. 2007 May;176(1):553-61. Epub 2006 Dec 18.PMID: 17179077 [PubMed - indexed for MEDLINE]Related articlesFree article

On the analysis of copy-number variations in genome-wide association studies: a translation of the family-based association test.

Ionita-Laza I, Perry GH, Raby BA, Klanderman B, Lee C, Laird NM, Weiss ST, Lange C.

Genet Epidemiol. 2008 Apr;32(3):273-84.PMID: 18228561 [PubMed - indexed for MEDLINE]Related articles

Screening large-scale association study data: exploiting interactions using random forests.

Lunetta KL, Hayward LB, Segal J, Van Eerdewegh P.

BMC Genet. 2004 Dec 10;5(1):32.PMID: 15588316 [PubMed - indexed for MEDLINE]Related articlesFree article

Test for interaction between two unlinked loci.

Zhao J, Jin L, Xiong M.

Am J Hum Genet. 2006 Nov;79(5):831-45. Epub 2006 Sep 21.PMID: 17033960 [PubMed - indexed for MEDLINE]Related articlesFree article

Detailed analysis of the relative power of direct and indirect association studies and the implications for their interpretation.

Moskvina V, O'Donovan MC.

Hum Hered. 2007;64(1):63-73. Epub 2007 Apr 27.PMID: 17483598 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene Prospector: an evidence gateway for evaluating potential susceptibility genes and interacting risk factors for human diseases.

Yu W, Wulf A, Liu T, Khoury MJ, Gwinn M.

BMC Bioinformatics. 2008 Dec 8;9:528.PMID: 19063745 [PubMed - indexed for MEDLINE]Related articlesFree article

A perspective on epistasis: limits of models displaying no main effect.

Culverhouse R, Suarez BK, Lin J, Reich T.

Am J Hum Genet. 2002 Feb;70(2):461-71. Epub 2002 Jan 8.PMID: 11791213 [PubMed - indexed for MEDLINE]Related articlesFree article

Two-stage two-locus models in genome-wide association.

Evans DM, Marchini J, Morris AP, Cardon LR.

PLoS Genet. 2006 Sep 22;2(9):e157.PMID: 17002500 [PubMed - indexed for MEDLINE]Related articlesFree article

Haplotype-based quantitative trait mapping using a clustering algorithm.

Li J, Zhou Y, Elston RC.

BMC Bioinformatics. 2006 May 18;7:258.PMID: 16709248 [PubMed - indexed for MEDLINE]Related articlesFree article

Enabling personal genomics with an explicit test of epistasis.

Greene CS, Himmelstein DS, Nelson HH, Kelsey KT, Williams SM, Andrew AS, Karagas MR, Moore JH.

Pac Symp Biocomput. 2010:327-36.PMID: 19908385 [PubMed - in process]Related articlesFree article

Detecting purely epistatic multi-locus interactions by an omnibus permutation test on ensembles of two-locus analyses.

Wongseree W, Assawamakin A, Piroonratana T, Sinsomros S, Limwongse C, Chaiyaratana N.

BMC Bioinformatics. 2009 Sep 17;10:294.PMID: 19761607 [PubMed - in process]Related articlesFree article

A random forest approach to the detection of epistatic interactions in case-control studies.

Jiang R, Tang W, Wu X, Fu W.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S65.PMID: 19208169 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of population- and family-based methods for genetic association analysis in the presence of interacting loci.

Howson JM, Barratt BJ, Todd JA, Cordell HJ.

Genet Epidemiol. 2005 Jul;29(1):51-67.PMID: 15892093 [PubMed - indexed for MEDLINE]Related articles

Prioritize and select SNPs for association studies with multi-stage designs.

Li J.

J Comput Biol. 2008 Apr;15(3):241-57.PMID: 18352819 [PubMed - indexed for MEDLINE]Related articles