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The Gaggle: an open-source software system for integrating bioinformatics software and data sources.
Shannon PT, Reiss DJ, Bonneau R, Baliga NS.
BMC Bioinformatics. 2006 Mar 28;7:176.PMID: 16569235 [PubMed - indexed for MEDLINE]Related articlesFree article
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications.
Bare JC, Shannon PT, Schmid AK, Baliga NS.
BMC Bioinformatics. 2007 Nov 19;8:456.PMID: 18021453 [PubMed - indexed for MEDLINE]Related articlesFree article
An object-oriented programming system for the integration of internet-based bioinformatics resources.
Beveridge A.
Appl Bioinformatics. 2006;5(1):29-39.PMID: 16539535 [PubMed - indexed for MEDLINE]Related articles
A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.
Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.
BMC Bioinformatics. 2006 Apr 7;7:195.PMID: 16603075 [PubMed - indexed for MEDLINE]Related articlesFree article
BIRCH: a user-oriented, locally-customizable, bioinformatics system.
Fristensky B.
BMC Bioinformatics. 2007 Feb 9;8:54.PMID: 17291351 [PubMed - indexed for MEDLINE]Related articlesFree article
MILANO--custom annotation of microarray results using automatic literature searches.
Rubinstein R, Simon I.
BMC Bioinformatics. 2005 Jan 20;6:12.PMID: 15661078 [PubMed - indexed for MEDLINE]Related articlesFree article
cPath: open source software for collecting, storing, and querying biological pathways.
Cerami EG, Bader GD, Gross BE, Sander C.
BMC Bioinformatics. 2006 Nov 13;7:497.PMID: 17101041 [PubMed - indexed for MEDLINE]Related articlesFree article
Atlas - a data warehouse for integrative bioinformatics.
Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.
BMC Bioinformatics. 2005 Feb 21;6:34.PMID: 15723693 [PubMed - indexed for MEDLINE]Related articlesFree article
BIAS: Bioinformatics Integrated Application Software.
Finak G, Godin N, Hallett M, Pepin F, Rajabi Z, Srivastava V, Tang Z.
Bioinformatics. 2005 Apr 15;21(8):1745-6. Epub 2004 Nov 30.PMID: 15572471 [PubMed - indexed for MEDLINE]Related articlesFree article
Evolution of web services in bioinformatics.
Neerincx PB, Leunissen JA.
Brief Bioinform. 2005 Jun;6(2):178-88. Review.PMID: 15975226 [PubMed - indexed for MEDLINE]Related articlesFree article
Enabling high-throughput data management for systems biology: the Bioinformatics Resource Manager.
Shah AR, Singhal M, Klicker KR, Stephan EG, Wiley HS, Waters KM.
Bioinformatics. 2007 Apr 1;23(7):906-9. Epub 2007 Feb 25.PMID: 17324940 [PubMed - indexed for MEDLINE]Related articlesFree article
BioLingua: a programmable knowledge environment for biologists.
Massar JP, Travers M, Elhai J, Shrager J.
Bioinformatics. 2005 Jan 15;21(2):199-207. Epub 2004 Aug 12.PMID: 15308539 [PubMed - indexed for MEDLINE]Related articlesFree article
ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.
Huan T, Sivachenko AY, Harrison SH, Chen JY.
BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S5.PMID: 18793469 [PubMed - indexed for MEDLINE]Related articlesFree article
ArrayQuest: a web resource for the analysis of DNA microarray data.
Argraves GL, Jani S, Barth JL, Argraves WS.
BMC Bioinformatics. 2005 Dec 1;6:287.PMID: 16321157 [PubMed - indexed for MEDLINE]Related articlesFree article
ClusterControl: a web interface for distributing and monitoring bioinformatics applications on a Linux cluster.
Stocker G, Rieder D, Trajanoski Z.
Bioinformatics. 2004 Mar 22;20(5):805-7. Epub 2004 Jan 29.PMID: 14751976 [PubMed - indexed for MEDLINE]Related articlesFree article
Developing a modern web interface for database-driven bioinformatics tools.
Khandheria P, Garner HR.
IEEE Eng Med Biol Mag. 2007 Mar-Apr;26(2):96-8. No abstract available. PMID: 17441614 [PubMed - indexed for MEDLINE]Related articles
XML schemas for common bioinformatic data types and their application in workflow systems.
Seibel PN, Krüger J, Hartmeier S, Schwarzer K, Löwenthal K, Mersch H, Dandekar T, Giegerich R.
BMC Bioinformatics. 2006 Nov 6;7:490.PMID: 17087823 [PubMed - indexed for MEDLINE]Related articlesFree article
BIOZON: a system for unification, management and analysis of heterogeneous biological data.
Birkland A, Yona G.
BMC Bioinformatics. 2006 Feb 15;7:70.PMID: 16480510 [PubMed - indexed for MEDLINE]Related articlesFree article
Columba: an integrated database of proteins, structures, and annotations.
Trissl S, Rother K, Müller H, Steinke T, Koch I, Preissner R, Frömmel C, Leser U.
BMC Bioinformatics. 2005 Mar 31;6:81.PMID: 15801979 [PubMed - indexed for MEDLINE]Related articlesFree article
KDE Bioscience: platform for bioinformatics analysis workflows.
Lu Q, Hao P, Curcin V, He W, Li YY, Luo QM, Guo YK, Li YX.
J Biomed Inform. 2006 Aug;39(4):440-50. Epub 2005 Oct 11.PMID: 16260186 [PubMed - indexed for MEDLINE]Related articles
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