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    Results: 1 to 20 of 91

    1.

    An application of statistics to comparative metagenomics.

    Rodriguez-Brito B, Rohwer F, Edwards RA.

    BMC Bioinformatics. 2006 Mar 20;7:162.PMID: 16549025 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.

    Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, Kubal M, Paczian T, Rodriguez A, Stevens R, Wilke A, Wilkening J, Edwards RA.

    BMC Bioinformatics. 2008 Sep 19;9:386.PMID: 18803844 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    A factor analysis model for functional genomics.

    Kustra R, Shioda R, Zhu M.

    BMC Bioinformatics. 2006 Apr 21;7:216.PMID: 16630343 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    An ORFome assembly approach to metagenomics sequences analysis.

    Ye Y, Tang H.

    Comput Syst Bioinformatics Conf. 2008;7:3-13.PMID: 19642264 [PubMed - indexed for MEDLINE]Related articles

    5.

    Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures.

    Pride DT, Schoenfeld T.

    BMC Genomics. 2008 Sep 17;9:420.PMID: 18798991 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    A procedure for the estimation over time of metabolic fluxes in scenarios where measurements are uncertain and/or insufficient.

    Llaneras F, Picó J.

    BMC Bioinformatics. 2007 Oct 30;8:421.PMID: 17971203 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Building pathway clusters from Random Forests classification using class votes.

    Pang H, Zhao H.

    BMC Bioinformatics. 2008 Feb 6;9:87.PMID: 18254968 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context.

    Weniger M, Engelmann JC, Schultz J.

    BMC Bioinformatics. 2007 Jun 2;8:179.PMID: 17543125 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    C-terminal motif prediction in eukaryotic proteomes using comparative genomics and statistical over-representation across protein families.

    Austin RS, Provart NJ, Cutler SR.

    BMC Genomics. 2007 Jun 26;8:191.PMID: 17594486 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Using pyrosequencing to shed light on deep mine microbial ecology.

    Edwards RA, Rodriguez-Brito B, Wegley L, Haynes M, Breitbart M, Peterson DM, Saar MO, Alexander S, Alexander EC Jr, Rohwer F.

    BMC Genomics. 2006 Mar 20;7:57.PMID: 16549033 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Get the most out of your metagenome: computational analysis of environmental sequence data.

    Raes J, Foerstner KU, Bork P.

    Curr Opin Microbiol. 2007 Oct;10(5):490-8. Epub 2007 Oct 23. Review.PMID: 17936679 [PubMed - indexed for MEDLINE]Related articles

    12.

    An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis.

    Thum KE, Shin MJ, Gutiérrez RA, Mukherjee I, Katari MS, Nero D, Shasha D, Coruzzi GM.

    BMC Syst Biol. 2008 Apr 4;2:31.PMID: 18387196 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Time-dependent ARMA modeling of genomic sequences.

    Zielinski JS, Bouaynaya N, Schonfeld D, O'Neill W.

    BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S14.PMID: 18793459 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Robust detection and verification of linear relationships to generate metabolic networks using estimates of technical errors.

    Kose F, Budczies J, Holschneider M, Fiehn O.

    BMC Bioinformatics. 2007 May 21;8:162.PMID: 17517139 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances.

    Xu J.

    Mol Ecol. 2006 Jun;15(7):1713-31. Review.PMID: 16689892 [PubMed - indexed for MEDLINE]Related articles

    16.

    High-resolution metagenomics targets specific functional types in complex microbial communities.

    Kalyuzhnaya MG, Lapidus A, Ivanova N, Copeland AC, McHardy AC, Szeto E, Salamov A, Grigoriev IV, Suciu D, Levine SR, Markowitz VM, Rigoutsos I, Tringe SG, Bruce DC, Richardson PM, Lidstrom ME, Chistoserdova L.

    Nat Biotechnol. 2008 Sep;26(9):1029-34.PMID: 18711340 [PubMed - indexed for MEDLINE]Related articles

    17.

    Metagenomics: application of genomics to uncultured microorganisms.

    Handelsman J.

    Microbiol Mol Biol Rev. 2004 Dec;68(4):669-85. Review.PMID: 15590779 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Improving gene set analysis of microarray data by SAM-GS.

    Dinu I, Potter JD, Mueller T, Liu Q, Adewale AJ, Jhangri GS, Einecke G, Famulski KS, Halloran P, Yasui Y.

    BMC Bioinformatics. 2007 Jul 5;8:242.PMID: 17612399 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data.

    Zamboni N, Kümmel A, Heinemann M.

    BMC Bioinformatics. 2008 Apr 16;9:199.PMID: 18416814 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    A statistical toolbox for metagenomics: assessing functional diversity in microbial communities.

    Schloss PD, Handelsman J.

    BMC Bioinformatics. 2008 Jan 23;9:34.PMID: 18215273 [PubMed - indexed for MEDLINE]Related articlesFree article

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