PubMed

Various criteria in the evaluation of biomedical named entity recognition.

Tsai RT, Wu SH, Chou WC, Lin YC, He D, Hsiang J, Sung TY, Hsu WL.

BMC Bioinformatics. 2006 Feb 24;7:92.PMID: 16504116 [PubMed - indexed for MEDLINE]Related articlesFree article

Recognizing names in biomedical texts: a machine learning approach.

Zhou G, Zhang J, Su J, Shen D, Tan C.

Bioinformatics. 2004 May 1;20(7):1178-90. Epub 2004 Feb 10.PMID: 14871877 [PubMed - indexed for MEDLINE]Related articlesFree article

Assessment of disease named entity recognition on a corpus of annotated sentences.

Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S3.PMID: 18426548 [PubMed - indexed for MEDLINE]Related articlesFree article

POSBIOTM-NER: a trainable biomedical named-entity recognition system.

Song Y, Kim E, Lee GG, Yi BK.

Bioinformatics. 2005 Jun 1;21(11):2794-6. Epub 2005 Apr 6.PMID: 15814561 [PubMed - indexed for MEDLINE]Related articlesFree article

BIOSMILE: a semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features.

Tsai RT, Chou WC, Su YS, Lin YC, Sung CL, Dai HJ, Yeh IT, Ku W, Sung TY, Hsu WL.

BMC Bioinformatics. 2007 Sep 1;8:325.PMID: 17764570 [PubMed - indexed for MEDLINE]Related articlesFree article

Accelerating the annotation of sparse named entities by dynamic sentence selection.

Tsuruoka Y, Tsujii J, Ananiadou S.

BMC Bioinformatics. 2008 Nov 19;9 Suppl 11:S8.PMID: 19025694 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of character-level and part of speech features for name recognition in biomedical texts.

Collier N, Takeuchi K.

J Biomed Inform. 2004 Dec;37(6):423-35.PMID: 15542016 [PubMed - indexed for MEDLINE]Related articles

Comparative analysis of five protein-protein interaction corpora.

Pyysalo S, Airola A, Heimonen J, Björne J, Ginter F, Salakoski T.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S6.PMID: 18426551 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143.PMID: 18325104 [PubMed - indexed for MEDLINE]Related articlesFree article

Recognizing names in biomedical texts using mutual information independence model and SVM plus sigmoid.

Zhou GD.

Int J Med Inform. 2006 Jun;75(6):456-67. Epub 2005 Aug 19.PMID: 16112894 [PubMed - indexed for MEDLINE]Related articles

What makes a gene name? Named entity recognition in the biomedical literature.

Leser U, Hakenberg J.

Brief Bioinform. 2005 Dec;6(4):357-69.PMID: 16420734 [PubMed - indexed for MEDLINE]Related articlesFree article

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.PMID: 15960829 [PubMed - indexed for MEDLINE]Related articlesFree article

Enhancing HMM-based biomedical named entity recognition by studying special phenomena.

Zhang J, Shen D, Zhou G, Su J, Tan CL.

J Biomed Inform. 2004 Dec;37(6):411-22.PMID: 15542015 [PubMed - indexed for MEDLINE]Related articles

A survey of current work in biomedical text mining.

Cohen AM, Hersh WR.

Brief Bioinform. 2005 Mar;6(1):57-71. Review.PMID: 15826357 [PubMed - indexed for MEDLINE]Related articlesFree article

OSIRISv1.2: a named entity recognition system for sequence variants of genes in biomedical literature.

Furlong LI, Dach H, Hofmann-Apitius M, Sanz F.

BMC Bioinformatics. 2008 Feb 5;9:84.PMID: 18251998 [PubMed - indexed for MEDLINE]Related articlesFree article

Biomedical named entity recognition using two-phase model based on SVMs.

Lee KJ, Hwang YS, Kim S, Rim HC.

J Biomed Inform. 2004 Dec;37(6):436-47.PMID: 15542017 [PubMed - indexed for MEDLINE]Related articles

Incorporating rich background knowledge for gene named entity classification and recognition.

Li Y, Lin H, Yang Z.

BMC Bioinformatics. 2009 Jul 17;10:223.PMID: 19615051 [PubMed - indexed for MEDLINE]Related articlesFree article

Semi-automatic conversion of BioProp semantic annotation to PASBio annotation.

Tsai RT, Dai HJ, Huang CH, Hsu WL.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S18.PMID: 19091017 [PubMed - indexed for MEDLINE]Related articlesFree article

New challenges for text mining: mapping between text and manually curated pathways.

Oda K, Kim JD, Ohta T, Okanohara D, Matsuzaki T, Tateisi Y, Tsujii J.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S5.PMID: 18426550 [PubMed - indexed for MEDLINE]Related articlesFree article

Corpus annotation for mining biomedical events from literature.

Kim JD, Ohta T, Tsujii J.

BMC Bioinformatics. 2008 Jan 8;9:10.PMID: 18182099 [PubMed - indexed for MEDLINE]Related articlesFree article