My NCBI | Sign In
RSS Settings
  • Search:

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

    Results: 1 to 20 of 309

    1.

    CoryneRegNet: an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks.

    Baumbach J, Brinkrolf K, Czaja LF, Rahmann S, Tauch A.

    BMC Genomics. 2006 Feb 14;7:24.PMID: 16478536 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks.

    Baumbach J.

    BMC Bioinformatics. 2007 Nov 6;8:429.PMID: 17986320 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Linking Cytoscape and the corynebacterial reference database CoryneRegNet.

    Baumbach J, Apeltsin L.

    BMC Genomics. 2008 Apr 21;9:184.PMID: 18426593 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet.

    Baumbach J, Wittkop T, Kleindt CK, Tauch A.

    Nat Protoc. 2009;4(6):992-1005.PMID: 19498379 [PubMed - indexed for MEDLINE]Related articles

    5.

    CoryneRegNet 3.0--an interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli.

    Baumbach J, Wittkop T, Rademacher K, Rahmann S, Brinkrolf K, Tauch A.

    J Biotechnol. 2007 Apr 30;129(2):279-89. Epub 2006 Dec 20.PMID: 17229482 [PubMed - indexed for MEDLINE]Related articles

    6.

    Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks.

    Baumbach J, Tauch A, Rahmann S.

    Brief Bioinform. 2009 Jan;10(1):75-83. Epub 2008 Dec 12.PMID: 19074493 [PubMed - indexed for MEDLINE]Related articles

    7.

    CoryneCenter - an online resource for the integrated analysis of corynebacterial genome and transcriptome data.

    Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A.

    BMC Syst Biol. 2007 Nov 22;1:55.PMID: 18034885 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Reconstruction of microbial transcriptional regulatory networks.

    Herrgård MJ, Covert MW, Palsson BØ.

    Curr Opin Biotechnol. 2004 Feb;15(1):70-7. Review.PMID: 15102470 [PubMed - indexed for MEDLINE]Related articles

    9.

    The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum.

    Brune I, Werner H, Hüser AT, Kalinowski J, Pühler A, Tauch A.

    BMC Genomics. 2006 Feb 9;7:21.PMID: 16469103 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Atlas - a data warehouse for integrative bioinformatics.

    Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

    BMC Bioinformatics. 2005 Feb 21;6:34.PMID: 15723693 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies.

    Zhao F, Xuan Z, Liu L, Zhang MQ.

    Nucleic Acids Res. 2005 Jan 1;33(Database issue):D103-7.PMID: 15608156 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

    Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

    BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.

    Davuluri RV, Sun H, Palaniswamy SK, Matthews N, Molina C, Kurtz M, Grotewold E.

    BMC Bioinformatics. 2003 Jun 23;4:25. Epub 2003 Jun 23.PMID: 12820902 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences.

    Brune I, Brinkrolf K, Kalinowski J, Pühler A, Tauch A.

    BMC Genomics. 2005 Jun 7;6(1):86.PMID: 15938759 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae.

    Herrgård MJ, Lee BS, Portnoy V, Palsson BØ.

    Genome Res. 2006 May;16(5):627-35. Epub 2006 Apr 10.PMID: 16606697 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Investigating transcriptional regulation: from analysis of complex networks to discovery of cis-regulatory elements.

    Janky R, Helden J, Babu MM.

    Methods. 2009 Jul;48(3):277-86. Epub 2009 May 18.PMID: 19450688 [PubMed - indexed for MEDLINE]Related articles

    17.

    The Innate Immune Database (IIDB).

    Korb M, Rust AG, Thorsson V, Battail C, Li B, Hwang D, Kennedy KA, Roach JC, Rosenberger CM, Gilchrist M, Zak D, Johnson C, Marzolf B, Aderem A, Shmulevich I, Bolouri H.

    BMC Immunol. 2008 Mar 5;9:7.PMID: 18321385 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Java-based application framework for visualization of gene regulatory region annotations.

    Sun H, Davuluri RV.

    Bioinformatics. 2004 Mar 22;20(5):727-34. Epub 2004 Jan 29.PMID: 14751988 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.

    Huan T, Sivachenko AY, Harrison SH, Chen JY.

    BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S5.PMID: 18793469 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

    Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

    BMC Bioinformatics. 2008 Apr 21;9:203.PMID: 18426580 [PubMed - indexed for MEDLINE]Related articlesFree article

    Display Settings:

    Format
    Items per page
    Sort by

    Send to:

    Choose Destination

    Supplemental Content

    Filter your results:

    Find related data

    Recent activity