PubMed

Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach.

Cui L, Leebens-Mack J, Wang LS, Tang J, Rymarquis L, Stern DB, dePamphilis CW.

BMC Evol Biol. 2006 Feb 9;6:13.PMID: 16469102 [PubMed - indexed for MEDLINE]Related articlesFree article

The chloroplast genome sequence of the green alga Leptosira terrestris: multiple losses of the inverted repeat and extensive genome rearrangements within the Trebouxiophyceae.

de Cambiaire JC, Otis C, Turmel M, Lemieux C.

BMC Genomics. 2007 Jul 4;8:213.PMID: 17610731 [PubMed - indexed for MEDLINE]Related articlesFree article

Conserved gene clusters in the highly rearranged chloroplast genomes of Chlamydomonas moewusii and Chlamydomonas reinhardtii.

Boudreau E, Otis C, Turmel M.

Plant Mol Biol. 1994 Feb;24(4):585-602.PMID: 8155879 [PubMed - indexed for MEDLINE]Related articles

Extensive gene rearrangements in the chloroplast DNAs of Chlamydomonas species featuring multiple dispersed repeats.

Boudreau E, Turmel M.

Mol Biol Evol. 1996 Jan;13(1):233-43.PMID: 8583896 [PubMed - indexed for MEDLINE]Related articlesFree article

The chloroplast genome sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) reveals unusual structural features and new insights into the branching order of chlorophyte lineages.

Pombert JF, Otis C, Lemieux C, Turmel M.

Mol Biol Evol. 2005 Sep;22(9):1903-18. Epub 2005 Jun 1.PMID: 15930151 [PubMed - indexed for MEDLINE]Related articlesFree article

The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes.

Pombert JF, Lemieux C, Turmel M.

BMC Biol. 2006 Feb 3;4:3.PMID: 16472375 [PubMed - indexed for MEDLINE]Related articlesFree article

The complete chloroplast genome sequence of the chlorophycean green alga Scenedesmus obliquus reveals a compact gene organization and a biased distribution of genes on the two DNA strands.

de Cambiaire JC, Otis C, Lemieux C, Turmel M.

BMC Evol Biol. 2006 Apr 25;6:37.PMID: 16638149 [PubMed - indexed for MEDLINE]Related articlesFree article

Chloroplast DNA sequence of the green alga Oedogonium cardiacum (Chlorophyceae): unique genome architecture, derived characters shared with the Chaetophorales and novel genes acquired through horizontal transfer.

Brouard JS, Otis C, Lemieux C, Turmel M.

BMC Genomics. 2008 Jun 16;9:290.PMID: 18558012 [PubMed - indexed for MEDLINE]Related articlesFree article

The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales.

Turmel M, Otis C, Lemieux C.

BMC Biol. 2005 Oct 20;3:22.PMID: 16236178 [PubMed - indexed for MEDLINE]Related articlesFree article

The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats.

Maul JE, Lilly JW, Cui L, dePamphilis CW, Miller W, Harris EH, Stern DB.

Plant Cell. 2002 Nov;14(11):2659-79.PMID: 12417694 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene rearrangements in Chlamydomonas chloroplast DNAs are accounted for by inversions and by the expansion/contraction of the inverted repeat.

Boudreau E, Turmel M.

Plant Mol Biol. 1995 Jan;27(2):351-64.PMID: 7888624 [PubMed - indexed for MEDLINE]Related articles

The chloroplast genome sequence of Chara vulgaris sheds new light into the closest green algal relatives of land plants.

Turmel M, Otis C, Lemieux C.

Mol Biol Evol. 2006 Jun;23(6):1324-38. Epub 2006 Apr 12.PMID: 16611644 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat.

Yue F, Cui L, dePamphilis CW, Moret BM, Tang J.

BMC Genomics. 2008;9 Suppl 1:S25.PMID: 18366615 [PubMed - indexed for MEDLINE]Related articlesFree article

Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes.

Cosner ME, Raubeson LA, Jansen RK.

BMC Evol Biol. 2004 Aug 23;4:27.PMID: 15324459 [PubMed - indexed for MEDLINE]Related articlesFree article

The chloroplast genomes of the green algae Pedinomonas minor, Parachlorella kessleri, and Oocystis solitaria reveal a shared ancestry between the Pedinomonadales and Chlorellales.

Turmel M, Otis C, Lemieux C.

Mol Biol Evol. 2009 Oct;26(10):2317-31. Epub 2009 Jul 3.PMID: 19578159 [PubMed - indexed for MEDLINE]Related articles

Dynamics of genome rearrangement in bacterial populations.

Darling AE, Miklós I, Ragan MA.

PLoS Genet. 2008 Jul 18;4(7):e1000128.PMID: 18650965 [PubMed - indexed for MEDLINE]Related articlesFree article

Complete nucleotide sequence of the Cryptomeria japonica D. Don. chloroplast genome and comparative chloroplast genomics: diversified genomic structure of coniferous species.

Hirao T, Watanabe A, Kurita M, Kondo T, Takata K.

BMC Plant Biol. 2008 Jun 23;8:70.PMID: 18570682 [PubMed - indexed for MEDLINE]Related articlesFree article

A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies.

Lemieux C, Otis C, Turmel M.

BMC Biol. 2007 Jan 12;5:2.PMID: 17222354 [PubMed - indexed for MEDLINE]Related articlesFree article

Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes.

Haberle RC, Fourcade HM, Boore JL, Jansen RK.

J Mol Evol. 2008 Apr;66(4):350-61. Epub 2008 Mar 11.PMID: 18330485 [PubMed - indexed for MEDLINE]Related articles

Evidence for co-evolution of gene order and recombination rate.

Pál C, Hurst LD.

Nat Genet. 2003 Mar;33(3):392-5. Epub 2003 Feb 10.PMID: 12577060 [PubMed - indexed for MEDLINE]Related articles