PubMed

Identifying biological concepts from a protein-related corpus with a probabilistic topic model.

Zheng B, McLean DC Jr, Lu X.

BMC Bioinformatics. 2006 Feb 8;7:58.PMID: 16466569 [PubMed - indexed for MEDLINE]Related articlesFree article

Exploring supervised and unsupervised methods to detect topics in biomedical text.

Lee M, Wang W, Yu H.

BMC Bioinformatics. 2006 Mar 16;7:140.PMID: 16539745 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering semantic features in the literature: a foundation for building functional associations.

Chagoyen M, Carmona-Saez P, Shatkay H, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2006 Jan 26;7:41.PMID: 16438716 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstracts.

Chun HW, Tsuruoka Y, Kim JD, Shiba R, Nagata N, Hishiki T, Tsujii J.

BMC Bioinformatics. 2006 Nov 24;7 Suppl 3:S4.PMID: 17134477 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic assignment of biomedical categories: toward a generic approach.

Ruch P.

Bioinformatics. 2006 Mar 15;22(6):658-64. Epub 2005 Nov 15.PMID: 16287934 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene clustering by latent semantic indexing of MEDLINE abstracts.

Homayouni R, Heinrich K, Wei L, Berry MW.

Bioinformatics. 2005 Jan 1;21(1):104-15. Epub 2004 Aug 12.PMID: 15308538 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic extraction of gene/protein biological functions from biomedical text.

Koike A, Niwa Y, Takagi T.

Bioinformatics. 2005 Apr 1;21(7):1227-36. Epub 2004 Oct 27.PMID: 15509601 [PubMed - indexed for MEDLINE]Related articlesFree article

Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets.

Aubry M, Monnier A, Chicault C, de Tayrac M, Galibert MD, Burgun A, Mosser J.

BMC Bioinformatics. 2006 May 4;7:241.PMID: 16674810 [PubMed - indexed for MEDLINE]Related articlesFree article

Tagging gene and protein names in biomedical text.

Tanabe L, Wilbur WJ.

Bioinformatics. 2002 Aug;18(8):1124-32.PMID: 12176836 [PubMed - indexed for MEDLINE]Related articlesFree article

Assessment of disease named entity recognition on a corpus of annotated sentences.

Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S3.PMID: 18426548 [PubMed - indexed for MEDLINE]Related articlesFree article

Statistical modeling of biomedical corpora: mining the Caenorhabditis Genetic Center Bibliography for genes related to life span.

Blei DM, Franks K, Jordan MI, Mian IS.

BMC Bioinformatics. 2006 May 8;7:250.PMID: 16681860 [PubMed - indexed for MEDLINE]Related articlesFree article

A multi-level text mining method to extract biological relationships.

Palakal M, Stephens M, Mukhopadhyay S, Raje R, Rhodes S.

Proc IEEE Comput Soc Bioinform Conf. 2002;1:97-108.PMID: 15838127 [PubMed - indexed for MEDLINE]Related articles

MaSTerClass: a case-based reasoning system for the classification of biomedical terms.

Spasic I, Ananiadou S, Tsujii J.

Bioinformatics. 2005 Jun 1;21(11):2748-58. Epub 2005 Feb 22.PMID: 15728115 [PubMed - indexed for MEDLINE]Related articlesFree article

Literature-based concept profiles for gene annotation: the issue of weighting.

Jelier R, Schuemie MJ, Roes PJ, van Mulligen EM, Kors JA.

Int J Med Inform. 2008 May;77(5):354-62. Epub 2007 Sep 10.PMID: 17827057 [PubMed - indexed for MEDLINE]Related articles

A coherent graph-based semantic clustering and summarization approach for biomedical literature and a new summarization evaluation method.

Yoo I, Hu X, Song IY.

BMC Bioinformatics. 2007 Nov 27;8 Suppl 9:S4.PMID: 18047705 [PubMed - indexed for MEDLINE]Related articlesFree article

Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Müller HM, Kenny EE, Sternberg PW.

PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.PMID: 15383839 [PubMed - indexed for MEDLINE]Related articlesFree article

EBIMed--text crunching to gather facts for proteins from Medline.

Rebholz-Schuhmann D, Kirsch H, Arregui M, Gaudan S, Riethoven M, Stoehr P.

Bioinformatics. 2007 Jan 15;23(2):e237-44.PMID: 17237098 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143.PMID: 18325104 [PubMed - indexed for MEDLINE]Related articlesFree article

Corpus annotation for mining biomedical events from literature.

Kim JD, Ohta T, Tsujii J.

BMC Bioinformatics. 2008 Jan 8;9:10.PMID: 18182099 [PubMed - indexed for MEDLINE]Related articlesFree article

GENIA corpus--semantically annotated corpus for bio-textmining.

Kim JD, Ohta T, Tateisi Y, Tsujii J.

Bioinformatics. 2003;19 Suppl 1:i180-2.PMID: 12855455 [PubMed - indexed for MEDLINE]Related articlesFree article