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    Results: 1 to 20 of 93

    1.

    MIAME/Plant - adding value to plant microarrray experiments.

    Zimmermann P, Schildknecht B, Craigon D, Garcia-Hernandez M, Gruissem W, May S, Mukherjee G, Parkinson H, Rhee S, Wagner U, Hennig L.

    Plant Methods. 2006 Jan 9;2:1.

    PMID:
    16401339
    [PubMed]
    Free PMC Article
    2.

    MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data.

    Navarange M, Game L, Fowler D, Wadekar V, Banks H, Cooley N, Rahman F, Hinshelwood J, Broderick P, Causton HC.

    BMC Bioinformatics. 2005 Nov 9;6:268.

    PMID:
    16280078
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    MiMiR--an integrated platform for microarray data sharing, mining and analysis.

    Tomlinson C, Thimma M, Alexandrakis S, Castillo T, Dennis JL, Brooks A, Bradley T, Turnbull C, Blaveri E, Barton G, Chiba N, Maratou K, Soutter P, Aitman T, Game L.

    BMC Bioinformatics. 2008 Sep 18;9:379.

    PMID:
    18801157
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    MicroGen: a MIAME compliant web system for microarray experiment information and workflow management.

    Burgarella S, Cattaneo D, Pinciroli F, Masseroli M.

    BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S6.

    PMID:
    16351755
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    The MGED Ontology: a resource for semantics-based description of microarray experiments.

    Whetzel PL, Parkinson H, Causton HC, Fan L, Fostel J, Fragoso G, Game L, Heiskanen M, Morrison N, Rocca-Serra P, Sansone SA, Taylor C, White J, Stoeckert CJ Jr.

    Bioinformatics. 2006 Apr 1;22(7):866-73. Epub 2006 Jan 21.

    PMID:
    16428806
    [PubMed - indexed for MEDLINE]
    Free Article
    6.

    NASCArrays: a repository for microarray data generated by NASC's transcriptomics service.

    Craigon DJ, James N, Okyere J, Higgins J, Jotham J, May S.

    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D575-7.

    PMID:
    14681484
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Genevestigator transcriptome meta-analysis and biomarker search using rice and barley gene expression databases.

    Zimmermann P, Laule O, Schmitz J, Hruz T, Bleuler S, Gruissem W.

    Mol Plant. 2008 Sep;1(5):851-7. Erratum in: Mol Plant. 2008 Nov;1(6):1088.

    PMID:
    19825587
    [PubMed - indexed for MEDLINE]
    8.

    Final Report on Carcinogens Background Document for Styrene.

    National Toxicology Program.

    Rep Carcinog Backgr Doc. 2008 Sep;(8-5978):i-398.

    PMID:
    20737009
    [PubMed - as supplied by publisher]
    9.

    Design and implementation of microarray gene expression markup language (MAGE-ML).

    Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr, Brazma A.

    Genome Biol. 2002 Aug 23;3(9):RESEARCH0046. Epub 2002 Aug 23.

    PMID:
    12225585
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

    Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M.

    Nat Genet. 2001 Dec;29(4):365-71.

    PMID:
    11726920
    [PubMed - indexed for MEDLINE]
    11.

    Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress.

    Mukherjee G, Abeygunawardena N, Parkinson H, Contrino S, Durinck S, Farne A, Holloway E, Lilja P, Moreau Y, Oezcimen A, Rayner T, Sharma A, Brazma A, Sarkans U, Shojatalab M.

    Plant Physiol. 2005 Oct;139(2):632-6.

    PMID:
    16219923
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Annotation of environmental OMICS data: application to the transcriptomics domain.

    Morrison N, Wood AJ, Hancock D, Shah S, Hakes L, Gray T, Tiwari B, Kille P, Cossins A, Hegarty M, Allen MJ, Wilson WH, Olive P, Last K, Kramer C, Bailhache T, Reeves J, Pallett D, Warne J, Nashar K, Parkinson H, Sansone SA, Rocca-Serra P, Stevens R, Snape J, Brass A, Field D.

    OMICS. 2006 Summer;10(2):172-8. Review.

    PMID:
    16901223
    [PubMed - indexed for MEDLINE]
    13.

    TmaDB: a repository for tissue microarray data.

    Sharma-Oates A, Quirke P, Westhead DR.

    BMC Bioinformatics. 2005 Sep 1;6:218.

    PMID:
    16137321
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Functional annotation of the Arabidopsis genome using controlled vocabularies.

    Berardini TZ, Mundodi S, Reiser L, Huala E, Garcia-Hernandez M, Zhang P, Mueller LA, Yoon J, Doyle A, Lander G, Moseyko N, Yoo D, Xu I, Zoeckler B, Montoya M, Miller N, Weems D, Rhee SY.

    Plant Physiol. 2004 Jun;135(2):745-55. Epub 2004 Jun 1.

    PMID:
    15173566
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    MGED standards: work in progress.

    Ball CA, Brazma A.

    OMICS. 2006 Summer;10(2):138-44. Review.

    PMID:
    16901218
    [PubMed - indexed for MEDLINE]
    16.

    The MGED ontology: a framework for describing functional genomics experiments.

    Stoeckert CJ Jr, Parkinson H.

    Comp Funct Genomics. 2003;4(1):127-32.

    PMID:
    18629093
    [PubMed]
    Free PMC Article
    17.

    Microarray data quality analysis: lessons from the AFGC project. Arabidopsis Functional Genomics Consortium.

    Finkelstein D, Ewing R, Gollub J, Sterky F, Cherry JM, Somerville S.

    Plant Mol Biol. 2002 Jan;48(1-2):119-31. Review.

    PMID:
    11860205
    [PubMed - indexed for MEDLINE]
    18.

    Web-based analysis of the mouse transcriptome using Genevestigator.

    Laule O, Hirsch-Hoffmann M, Hruz T, Gruissem W, Zimmermann P.

    BMC Bioinformatics. 2006 Jun 21;7:311.

    PMID:
    16790046
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    SiPaGene: A new repository for instant online retrieval, sharing and meta-analyses of GeneChip expression data.

    Menssen A, Edinger G, Grün JR, Haase U, Baumgrass R, Grützkau A, Radbruch A, Burmester GR, Häupl T.

    BMC Genomics. 2009 Mar 5;10:98.

    PMID:
    19265543
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation.

    Hermida L, Schaad O, Demougin P, Descombes P, Primig M.

    BMC Bioinformatics. 2006 Apr 5;7:190.

    PMID:
    16597336
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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