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    Results: 1 to 20 of 99

    1.

    Ulysses - an application for the projection of molecular interactions across species.

    Kemmer D, Huang Y, Shah SP, Lim J, Brumm J, Yuen MM, Ling J, Xu T, Wasserman WW, Ouellette BF.

    Genome Biol. 2005;6(12):R106. Epub 2005 Dec 2.

    PMID:
    16356269
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    The BioGRID Interaction Database: 2008 update.

    Breitkreutz BJ, Stark C, Reguly T, Boucher L, Breitkreutz A, Livstone M, Oughtred R, Lackner DH, Bähler J, Wood V, Dolinski K, Tyers M.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D637-40. Epub 2007 Nov 13.

    PMID:
    18000002
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions.

    Yu J, Pacifico S, Liu G, Finley RL Jr.

    BMC Genomics. 2008 Oct 7;9:461.

    PMID:
    18840285
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    JNets: exploring networks by integrating annotation.

    Macpherson JI, Pinney JW, Robertson DL.

    BMC Bioinformatics. 2009 Mar 26;10:95.

    PMID:
    19323810
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    IntAct--open source resource for molecular interaction data.

    Kerrien S, Alam-Faruque Y, Aranda B, Bancarz I, Bridge A, Derow C, Dimmer E, Feuermann M, Friedrichsen A, Huntley R, Kohler C, Khadake J, Leroy C, Liban A, Lieftink C, Montecchi-Palazzi L, Orchard S, Risse J, Robbe K, Roechert B, Thorneycroft D, Zhang Y, Apweiler R, Hermjakob H.

    Nucleic Acids Res. 2007 Jan;35(Database issue):D561-5. Epub 2006 Dec 1.

    PMID:
    17145710
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

    Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

    BMC Bioinformatics. 2006 Apr 7;7:195.

    PMID:
    16603075
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    CAPIH: a Web interface for comparative analyses and visualization of host-HIV protein-protein interactions.

    Lin FK, Pan CL, Yang JM, Chuang TJ, Chen FC.

    BMC Microbiol. 2009 Aug 12;9:164.

    PMID:
    19674441
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    The GRID: The General Repository for Interaction Datasets.

    Breitkreutz BJ, Stark C, Tyers M.

    Genome Biol. 2002;3(12):PREPRINT0013. Epub 2002 Nov 21.

    PMID:
    12537553
    [PubMed - indexed for MEDLINE]
    9.

    Installing a local copy of the Reactome Web site and database.

    Vastrik I.

    Curr Protoc Bioinformatics. 2008 Mar;Chapter 9:Unit 9.10.

    PMID:
    18428688
    [PubMed - indexed for MEDLINE]
    10.

    3D-interologs: an evolution database of physical protein- protein interactions across multiple genomes.

    Lo YS, Chen YC, Yang JM.

    BMC Genomics. 2010 Dec 1;11 Suppl 3:S7.

    PMID:
    21143789
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    HAPPI: an online database of comprehensive human annotated and predicted protein interactions.

    Chen JY, Mamidipalli S, Huan T.

    BMC Genomics. 2009 Jul 7;10 Suppl 1:S16.

    PMID:
    19594875
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.

    Salwinski L, Eisenberg D.

    Bioinformatics. 2007 Aug 15;23(16):2193-5. Epub 2007 Jun 6.

    PMID:
    17553858
    [PubMed - indexed for MEDLINE]
    Free Article
    13.

    APID: Agile Protein Interaction DataAnalyzer.

    Prieto C, De Las Rivas J.

    Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W298-302.

    PMID:
    16845013
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    iVici: Interrelational Visualization and Correlation Interface.

    Tarassov K, Michnick SW.

    Genome Biol. 2005;6(13):R115. Epub 2005 Dec 30.

    PMID:
    16420674
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    The Gene Set Builder: collation, curation, and distribution of sets of genes.

    Yusuf D, Lim JS, Wasserman WW.

    BMC Bioinformatics. 2005 Dec 21;6:305.

    PMID:
    16371163
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    BioGRID: a general repository for interaction datasets.

    Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, Tyers M.

    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D535-9.

    PMID:
    16381927
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Biskit--a software platform for structural bioinformatics.

    Grünberg R, Nilges M, Leckner J.

    Bioinformatics. 2007 Mar 15;23(6):769-70. Epub 2007 Jan 18.

    PMID:
    17237072
    [PubMed - indexed for MEDLINE]
    Free Article
    18.

    PRISM: protein-protein interaction prediction by structural matching.

    Keskin O, Nussinov R, Gursoy A.

    Methods Mol Biol. 2008;484:505-21.

    PMID:
    18592198
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    PIANA: protein interactions and network analysis.

    Aragues R, Jaeggi D, Oliva B.

    Bioinformatics. 2006 Apr 15;22(8):1015-7. Epub 2006 Mar 1.

    PMID:
    16510498
    [PubMed - indexed for MEDLINE]
    Free Article
    20.

    The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

    Côté RG, Jones P, Martens L, Kerrien S, Reisinger F, Lin Q, Leinonen R, Apweiler R, Hermjakob H.

    BMC Bioinformatics. 2007 Oct 18;8:401.

    PMID:
    17945017
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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