PubMed

NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae.

Rambaldi D, Guffanti A, Morandi P, Cassata G.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S22.PMID: 16351749 [PubMed - indexed for MEDLINE]Related articlesFree article

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.

Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, Griffiths-Jones S, Harris TW, Hillier LW, Kamath R, Kuwabara PE, Mardis ER, Marra MA, Miner TL, Minx P, Mullikin JC, Plumb RW, Rogers J, Schein JE, Sohrmann M, Spieth J, Stajich JE, Wei C, Willey D, Wilson RK, Durbin R, Waterston RH.

PLoS Biol. 2003 Nov;1(2):E45. Epub 2003 Nov 17.PMID: 14624247 [PubMed - indexed for MEDLINE]Related articlesFree article

CisOrtho: a program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting.

Bigelow HR, Wenick AS, Wong A, Hobert O.

BMC Bioinformatics. 2004 Mar 12;5:27.PMID: 15113408 [PubMed - indexed for MEDLINE]Related articlesFree article

nGASP--the nematode genome annotation assessment project.

Coghlan A, Fiedler TJ, McKay SJ, Flicek P, Harris TW, Blasiar D; nGASP Consortium, Stein LD.

BMC Bioinformatics. 2008 Dec 19;9:549.PMID: 19099578 [PubMed - indexed for MEDLINE]Related articlesFree article

The gut esterase gene (ges-1) from the nematodes Caenorhabditis elegans and Caenorhabditis briggsae.

Kennedy BP, Aamodt EJ, Allen FL, Chung MA, Heschl MF, McGhee JD.

J Mol Biol. 1993 Feb 20;229(4):890-908.PMID: 8445654 [PubMed - indexed for MEDLINE]Related articles

[Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes]

Zhang DL, Ji L, Li YD.

Yi Chuan Xue Bao. 2004 May;31(5):431-43. Chinese. PMID: 15478601 [PubMed - indexed for MEDLINE]Related articles

MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.

Marinescu VD, Kohane IS, Riva A.

BMC Bioinformatics. 2005 Mar 30;6:79.PMID: 15799782 [PubMed - indexed for MEDLINE]Related articlesFree article

Differences in non-LTR retrotransposons within C. elegans and C. briggsae genomes.

Zagrobelny M, Jeffares DC, Arctander P.

Gene. 2004 Apr 14;330:61-6.PMID: 15087124 [PubMed - indexed for MEDLINE]Related articles

Conservation of sequence and function of the pag-3 genes from C. elegans and C. briggsae.

Aamodt E, Shen L, Marra M, Schein J, Rose B, McDermott JB.

Gene. 2000 Feb 8;243(1-2):67-74.PMID: 10675614 [PubMed - indexed for MEDLINE]Related articles

Identification of a novel cis-regulatory element involved in the heat shock response in Caenorhabditis elegans using microarray gene expression and computational methods.

GuhaThakurta D, Palomar L, Stormo GD, Tedesco P, Johnson TE, Walker DW, Lithgow G, Kim S, Link CD.

Genome Res. 2002 May;12(5):701-12. Erratum in: Genome Res 2002 Aug;12(8):1301. PMID: 11997337 [PubMed - indexed for MEDLINE]Related articlesFree article

Caenorhabditis elegans cisRED: a catalogue of conserved genomic elements.

Sleumer MC, Bilenky M, He A, Robertson G, Thiessen N, Jones SJ.

Nucleic Acids Res. 2009 Mar;37(4):1323-34. Epub 2009 Jan 16.PMID: 19151087 [PubMed - indexed for MEDLINE]Related articlesFree article

GATA: a graphic alignment tool for comparative sequence analysis.

Nix DA, Eisen MB.

BMC Bioinformatics. 2005 Jan 17;6:9.PMID: 15655071 [PubMed - indexed for MEDLINE]Related articlesFree article

Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment.

Kent WJ, Zahler AM.

Genome Res. 2000 Aug;10(8):1115-25.PMID: 10958630 [PubMed - indexed for MEDLINE]Related articlesFree article

Homologs of the Caenorhabditis elegans masculinizing gene her-1 in C. briggsae and the filarial parasite Brugia malayi.

Streit A, Li W, Robertson B, Schein J, Kamal IH, Marra M, Wood WB.

Genetics. 1999 Aug;152(4):1573-84.PMID: 10430584 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative promoter region analysis powered by CORG.

Dieterich C, Grossmann S, Tanzer A, Röpcke S, Arndt PF, Stadler PF, Vingron M.

BMC Genomics. 2005 Feb 21;6(1):24.PMID: 15723697 [PubMed - indexed for MEDLINE]Related articlesFree article

Conservation of function and expression of unc-119 from two Caenorhabditis species despite divergence of non-coding DNA.

Maduro M, Pilgrim D.

Gene. 1996 Dec 12;183(1-2):77-85.PMID: 8996090 [PubMed - indexed for MEDLINE]Related articles

Pattern of selective constraint in C. elegans and C. briggsae genomes.

Shabalina SA, Kondrashov AS.

Genet Res. 1999 Aug;74(1):23-30.PMID: 10505405 [PubMed - indexed for MEDLINE]Related articles

Function and evolution of the serotonin-synthetic bas-1 gene and other aromatic amino acid decarboxylase genes in Caenorhabditis.

Hare EE, Loer CM.

BMC Evol Biol. 2004 Aug 2;4:24.PMID: 15287963 [PubMed - indexed for MEDLINE]Related articlesFree article

Enrichment of regulatory signals in conserved non-coding genomic sequence.

Levy S, Hannenhalli S, Workman C.

Bioinformatics. 2001 Oct;17(10):871-7.PMID: 11673231 [PubMed - indexed for MEDLINE]Related articlesFree article

CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison.

Castrignanò T, Canali A, Grillo G, Liuni S, Mignone F, Pesole G.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W624-7.PMID: 15215464 [PubMed - indexed for MEDLINE]Related articlesFree article