PubMed

An algorithm for automatic evaluation of the spot quality in two-color DNA microarray experiments.

Novikov E, Barillot E.

BMC Bioinformatics. 2005 Dec 9;6:293.PMID: 16336688 [PubMed - indexed for MEDLINE]Related articlesFree article

Multichannel segmentation of cDNA microarray images using the Bayes classifier.

Giannakeas N, Fotiadis DI.

Conf Proc IEEE Eng Med Biol Soc. 2007;2007:3466-9.PMID: 18002743 [PubMed - indexed for MEDLINE]Related articles

Automatic analysis of DNA microarray images using mathematical morphology.

Angulo J, Serra J.

Bioinformatics. 2003 Mar 22;19(5):553-62.PMID: 12651712 [PubMed - indexed for MEDLINE]Related articlesFree article

Gridding spot centers of smoothly distorted microarray images.

Ho J, Hwang WL, Lu HH, Lee DT.

IEEE Trans Image Process. 2006 Feb;15(2):342-53.PMID: 16479804 [PubMed - indexed for MEDLINE]Related articles

Automatic microarray spot segmentation using a Snake-Fisher model.

Ho J, Hwang WL.

IEEE Trans Med Imaging. 2008 Jun;27(6):847-57.PMID: 18541491 [PubMed - indexed for MEDLINE]Related articles

Genes expression level quantification using a spot-based algorithmic pipeline.

Daskalakis A, Cavouras D, Bougioukos P, Kostopoulos S, Georgiadis P, Kalatzis I, Kagadis G, Nikiforidis G.

Conf Proc IEEE Eng Med Biol Soc. 2007;2007:1148-51.PMID: 18002165 [PubMed - indexed for MEDLINE]Related articles

A novel approach for high-quality microarray processing using third-dye array visualization technology.

Wang X, Jiang N, Feng X, Xie Y, Tonellato PJ, Ghosh S, Hessner MJ.

IEEE Trans Nanobioscience. 2003 Dec;2(4):193-201.PMID: 15376909 [PubMed - indexed for MEDLINE]Related articles

An automatic block and spot indexing with k-nearest neighbors graph for microarray image analysis.

Jung HY, Cho HG.

Bioinformatics. 2002;18 Suppl 2:S141-51.PMID: 12385996 [PubMed - indexed for MEDLINE]Related articlesFree article

A hill-climbing approach for automatic gridding of cDNA microarray images.

Rueda L, Vidyadharan V.

IEEE/ACM Trans Comput Biol Bioinform. 2006 Jan-Mar;3(1):72-83.PMID: 17048394 [PubMed - indexed for MEDLINE]Related articles

Identifying spots in microarray images.

Nagarajan R, Peterson CA.

IEEE Trans Nanobioscience. 2002 Jun;1(2):78-84.PMID: 16689211 [PubMed - indexed for MEDLINE]Related articles

Improving gene quantification by adjustable spot-image restoration.

Daskalakis A, Cavouras D, Bougioukos P, Kostopoulos S, Glotsos D, Kalatzis I, Kagadis GC, Argyropoulos C, Nikiforidis G.

Bioinformatics. 2007 Sep 1;23(17):2265-72. Epub 2007 Jun 28.PMID: 17599935 [PubMed - indexed for MEDLINE]Related articlesFree article

Segmentation of cDNA microarray spots using markov random field modeling.

Demirkaya O, Asyali MH, Shoukri MM.

Bioinformatics. 2005 Jul 1;21(13):2994-3000. Epub 2005 Apr 19.PMID: 15840703 [PubMed - indexed for MEDLINE]Related articlesFree article

Expression ratio evaluation in two-colour microarray experiments is significantly improved by correcting image misalignment.

Tang T, François N, Glatigny A, Agier N, Mucchielli MH, Aggerbeck L, Delacroix H.

Bioinformatics. 2007 Oct 15;23(20):2686-91. Epub 2007 Aug 12.PMID: 17698492 [PubMed - indexed for MEDLINE]Related articlesFree article

Spot detection and image segmentation in DNA microarray data.

Qin L, Rueda L, Ali A, Ngom A.

Appl Bioinformatics. 2005;4(1):1-11. Review.PMID: 16000008 [PubMed - indexed for MEDLINE]Related articles

A deformable grid-matching approach for microarray images.

Ceccarelli M, Antoniol G.

IEEE Trans Image Process. 2006 Oct;15(10):3178-88.PMID: 17022279 [PubMed - indexed for MEDLINE]Related articles

Methods for automatic microarray image segmentation.

Katzer M, Kummert F, Sagerer G.

IEEE Trans Nanobioscience. 2003 Dec;2(4):202-14.PMID: 15376910 [PubMed - indexed for MEDLINE]Related articles

An original genetic approach to the fully automatic gridding of microarray images.

Zacharia E, Maroulis D.

IEEE Trans Med Imaging. 2008 Jun;27(6):805-13.PMID: 18541487 [PubMed - indexed for MEDLINE]Related articles

Gridline: automatic grid alignment in DNA microarray scans.

Bajcsy P.

IEEE Trans Image Process. 2004 Jan;13(1):15-25.PMID: 15376953 [PubMed - indexed for MEDLINE]Related articles

A robust algorithm for ratio estimation in two-color microarray experiments.

Novikov E, Barillot E.

J Bioinform Comput Biol. 2005 Dec;3(6):1411-28.PMID: 16374914 [PubMed - indexed for MEDLINE]Related articles

Donuts, scratches and blanks: robust model-based segmentation of microarray images.

Li Q, Fraley C, Bumgarner RE, Yeung KY, Raftery AE.

Bioinformatics. 2005 Jun 15;21(12):2875-82. Epub 2005 Apr 21.PMID: 15845656 [PubMed - indexed for MEDLINE]Related articlesFree article