PubMed

Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast.

Ye P, Peyser BD, Spencer FA, Bader JS.

BMC Bioinformatics. 2005 Nov 9;6:270.PMID: 16283923 [PubMed - indexed for MEDLINE]Related articlesFree article

Genetic Interaction Motif Finding by expectation maximization--a novel statistical model for inferring gene modules from synthetic lethality.

Qi Y, Ye P, Bader JS.

BMC Bioinformatics. 2005 Dec 6;6:288.PMID: 16332255 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene function prediction from congruent synthetic lethal interactions in yeast.

Ye P, Peyser BD, Pan X, Boeke JD, Spencer FA, Bader JS.

Mol Syst Biol. 2005;1:2005.0026. Epub 2005 Nov 22.PMID: 16729061 [PubMed - indexed for MEDLINE]Related articlesFree article

Mapping genetically compensatory pathways from synthetic lethal interactions in yeast.

Ma X, Tarone AM, Li W.

PLoS One. 2008 Apr 9;3(4):e1922.PMID: 18398455 [PubMed - indexed for MEDLINE]Related articlesFree article

Predicting genetic interactions with random walks on biological networks.

Chipman KC, Singh AK.

BMC Bioinformatics. 2009 Jan 12;10:17.PMID: 19138426 [PubMed - indexed for MEDLINE]Related articlesFree article

Mining protein networks for synthetic genetic interactions.

Paladugu SR, Zhao S, Ray A, Raval A.

BMC Bioinformatics. 2008 Oct 9;9:426.PMID: 18844977 [PubMed - indexed for MEDLINE]Related articlesFree article

Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network.

Zhang LV, King OD, Wong SL, Goldberg DS, Tong AH, Lesage G, Andrews B, Bussey H, Boone C, Roth FP.

J Biol. 2005;4(2):6. Epub 2005 Jun 1.PMID: 15982408 [PubMed - indexed for MEDLINE]Related articlesFree article

A correlated motif approach for finding short linear motifs from protein interaction networks.

Tan SH, Hugo W, Sung WK, Ng SK.

BMC Bioinformatics. 2006 Nov 16;7:502.PMID: 17107624 [PubMed - indexed for MEDLINE]Related articlesFree article

Fault tolerance in protein interaction networks: stable bipartite subgraphs and redundant pathways.

Brady A, Maxwell K, Daniels N, Cowen LJ.

PLoS One. 2009;4(4):e5364. Epub 2009 Apr 28.PMID: 19399174 [PubMed - indexed for MEDLINE]Related articlesFree article

Genetic interaction network of the Saccharomyces cerevisiae type 1 phosphatase Glc7.

Logan MR, Nguyen T, Szapiel N, Knockleby J, Por H, Zadworny M, Neszt M, Harrison P, Bussey H, Mandato CA, Vogel J, Lesage G.

BMC Genomics. 2008 Jul 15;9:336.PMID: 18627629 [PubMed - indexed for MEDLINE]Related articlesFree article

Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.

Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, Myers CL, Parsons A, Friesen H, Oughtred R, Tong A, Stark C, Ho Y, Botstein D, Andrews B, Boone C, Troyanskya OG, Ideker T, Dolinski K, Batada NN, Tyers M.

J Biol. 2006;5(4):11. Epub 2006 Jun 8.PMID: 16762047 [PubMed - indexed for MEDLINE]Related articlesFree article

Differential evolutionary conservation of motif modes in the yeast protein interaction network.

Lee WP, Jeng BC, Pai TW, Tsai CP, Yu CY, Tzou WS.

BMC Genomics. 2006 Apr 25;7:89.PMID: 16638125 [PubMed - indexed for MEDLINE]Related articlesFree article

Identifying in vivo pathways using genome-wide genetic networks.

Gray JV, Krause SA.

Biochem Soc Trans. 2007 Dec;35(Pt 6):1538-41. Review.PMID: 18031262 [PubMed - indexed for MEDLINE]Related articles

Finding friends and enemies in an enemies-only network: a graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions.

Qi Y, Suhail Y, Lin YY, Boeke JD, Bader JS.

Genome Res. 2008 Dec;18(12):1991-2004. Epub 2008 Oct 2.PMID: 18832443 [PubMed - indexed for MEDLINE]Related articlesFree article

Network hubs buffer environmental variation in Saccharomyces cerevisiae.

Levy SF, Siegal ML.

PLoS Biol. 2008 Nov 4;6(11):e264.PMID: 18986213 [PubMed - indexed for MEDLINE]Related articlesFree article

Information flow analysis of interactome networks.

Missiuro PV, Liu K, Zou L, Ross BC, Zhao G, Liu JS, Ge H.

PLoS Comput Biol. 2009 Apr;5(4):e1000350. Epub 2009 Apr 10.PMID: 19503817 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae.

Yu X, Lin J, Masuda T, Esumi N, Zack DJ, Qian J.

Nucleic Acids Res. 2006 Feb 6;34(3):917-27. Print 2006.PMID: 16464824 [PubMed - indexed for MEDLINE]Related articlesFree article

Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality.

Zotenko E, Mestre J, O'Leary DP, Przytycka TM.

PLoS Comput Biol. 2008 Aug 1;4(8):e1000140.PMID: 18670624 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolutionary plasticity of genetic interaction networks.

Tischler J, Lehner B, Fraser AG.

Nat Genet. 2008 Apr;40(4):390-1. Epub 2008 Mar 23.PMID: 18362882 [PubMed - indexed for MEDLINE]Related articles

The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles.

Durek P, Walther D.

BMC Syst Biol. 2008 Nov 25;2:100.PMID: 19032748 [PubMed - indexed for MEDLINE]Related articlesFree article