Warning: The NCBI web site requires JavaScript to function. more...
Identification of cyanobacterial non-coding RNAs by comparative genome analysis.
Axmann IM, Kensche P, Vogel J, Kohl S, Herzel H, Hess WR.
Genome Biol. 2005;6(9):R73. Epub 2005 Aug 17.
Related citations
Biocomputational prediction of non-coding RNAs in model cyanobacteria.
Voss B, Georg J, Schön V, Ude S, Hess WR.
BMC Genomics. 2009 Mar 23;10:123.
A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria.
Voss B, Gierga G, Axmann IM, Hess WR.
BMC Genomics. 2007 Oct 17;8:375.
The Yfr2 ncRNA family, a group of abundant RNA molecules widely conserved in cyanobacteria.
Gierga G, Voss B, Hess WR.
RNA Biol. 2009 Jul-Aug;6(3):222-7. Epub 2009 Jul 1.
Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions.
Steigele S, Huber W, Stocsits C, Stadler PF, Nieselt K.
BMC Biol. 2007 Jun 18;5:25.
Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome.
Coenye T, Drevinek P, Mahenthiralingam E, Shah SA, Gill RT, Vandamme P, Ussery DW.
FEMS Microbiol Lett. 2007 Nov;276(1):83-92.
Two distinct types of 6S RNA in Prochlorococcus.
Axmann IM, Holtzendorff J, Voss B, Kensche P, Hess WR.
Gene. 2007 Dec 30;406(1-2):69-78. Epub 2007 Jun 22.
The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus.
Steglich C, Futschik ME, Lindell D, Voss B, Chisholm SW, Hess WR.
PLoS Genet. 2008 Aug 29;4(8):e1000173. Erratum in: PLoS Genet. 2008 Nov;4(11):. doi:10.1371/annotation/411b74ae-c4ce-43c9-bdd2-60c2bf60e672.
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change.
Uzilov AV, Keegan JM, Mathews DH.
BMC Bioinformatics. 2006 Mar 27;7:173.
A cyanobacterial non-coding RNA, Yfr1, is required for growth under multiple stress conditions.
Nakamura T, Naito K, Yokota N, Sugita C, Sugita M.
Plant Cell Physiol. 2007 Sep;48(9):1309-18. Epub 2007 Jul 29.
Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics.
McCutcheon JP, Eddy SR.
Nucleic Acids Res. 2003 Jul 15;31(14):4119-28.
Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array.
Vercruysse M, Fauvart M, Cloots L, Engelen K, Thijs IM, Marchal K, Michiels J.
BMC Genomics. 2010 Jan 20;11:53.
Detection of RNA structures in porcine EST data and related mammals.
Seemann SE, Gilchrist MJ, Hofacker IL, Stadler PF, Gorodkin J.
BMC Genomics. 2007 Sep 10;8:316.
Analysis of the hli gene family in marine and freshwater cyanobacteria.
Bhaya D, Dufresne A, Vaulot D, Grossman A.
FEMS Microbiol Lett. 2002 Oct 8;215(2):209-19.
Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021.
Ulvé VM, Sevin EW, Chéron A, Barloy-Hubler F.
BMC Genomics. 2007 Dec 19;8:467.
Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline.
Weinberg Z, Barrick JE, Yao Z, Roth A, Kim JN, Gore J, Wang JX, Lee ER, Block KF, Sudarsan N, Neph S, Tompa M, Ruzzo WL, Breaker RR.
Nucleic Acids Res. 2007;35(14):4809-19. Epub 2007 Jul 9.
De novo search for non-coding RNA genes in the AT-rich genome of Dictyostelium discoideum: performance of Markov-dependent genome feature scoring.
Larsson P, Hinas A, Ardell DH, Kirsebom LA, Virtanen A, Söderbom F.
Genome Res. 2008 Jun;18(6):888-99. Epub 2008 Mar 17.
Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis.
Weinberg Z, Perreault J, Meyer MM, Breaker RR.
Nature. 2009 Dec 3;462(7273):656-9.
Biocomputational prediction of small non-coding RNAs in Streptomyces.
Pánek J, Bobek J, Mikulík K, Basler M, Vohradský J.
BMC Genomics. 2008 May 13;9:217.
Searching genomes for noncoding RNA using FastR.
Zhang S, Haas B, Eskin E, Bafna V.
IEEE/ACM Trans Comput Biol Bioinform. 2005 Oct-Dec;2(4):366-79.
Filter your results:
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on