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Three subsets of sequence complexity and their relevance to biopolymeric information.

Abel DL, Trevors JT.

Theor Biol Med Model. 2005 Aug 11;2:29. Review.PMID: 16095527 [PubMed - indexed for MEDLINE]Related articlesFree article

Measuring the functional sequence complexity of proteins.

Durston KK, Chiu DK, Abel DL, Trevors JT.

Theor Biol Med Model. 2007 Dec 6;4:47.PMID: 18062814 [PubMed - indexed for MEDLINE]Related articlesFree article

The capabilities of chaos and complexity.

Abel DL.

Int J Mol Sci. 2009 Jan;10(1):247-91. Epub 2009 Jan 9.PMID: 19333445 [PubMed - in process]Related articlesFree article

RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure.

Liu Q, Yang Y, Chen C, Bu J, Zhang Y, Ye X.

BMC Bioinformatics. 2008 Mar 31;9:176.PMID: 18373878 [PubMed - indexed for MEDLINE]Related articlesFree article

Learning interpretable SVMs for biological sequence classification.

Rätsch G, Sonnenburg S, Schäfer C.

BMC Bioinformatics. 2006 Mar 20;7 Suppl 1:S9.PMID: 16723012 [PubMed - indexed for MEDLINE]Related articlesFree article

HMMoC--a compiler for hidden Markov models.

Lunter G.

Bioinformatics. 2007 Sep 15;23(18):2485-7. Epub 2007 Jul 10.PMID: 17623703 [PubMed - indexed for MEDLINE]Related articlesFree article

Support vector training of protein alignment models.

Yu CN, Joachims T, Elber R, Pillardy J.

J Comput Biol. 2008 Sep;15(7):867-80.PMID: 18707536 [PubMed - indexed for MEDLINE]Related articlesFree article

Fast model-based protein homology detection without alignment.

Hochreiter S, Heusel M, Obermayer K.

Bioinformatics. 2007 Jul 15;23(14):1728-36. Epub 2007 May 8.PMID: 17488755 [PubMed - indexed for MEDLINE]Related articlesFree article

Information content of protein sequences.

Weiss O, Jiménez-Montaño MA, Herzel H.

J Theor Biol. 2000 Oct 7;206(3):379-86.PMID: 10988023 [PubMed - indexed for MEDLINE]Related articles

Regularized Least Squares Cancer classifiers from DNA microarray data.

Ancona N, Maglietta R, D'Addabbo A, Liuni S, Pesole G.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S2.PMID: 16351746 [PubMed - indexed for MEDLINE]Related articlesFree article

Genes, information and sense: complexity and knowledge retrieval.

Sadovsky MG, Putintseva JA, Shchepanovsky AS.

Theory Biosci. 2008 Jun;127(2):69-78. Epub 2008 Apr 29. Review.PMID: 18443840 [PubMed - indexed for MEDLINE]Related articles

Unbiased pattern detection in microarray data series.

Ahnert SE, Willbrand K, Brown FC, Fink TM.

Bioinformatics. 2006 Jun 15;22(12):1471-6. Epub 2006 Apr 3.PMID: 16766565 [PubMed - indexed for MEDLINE]Related articlesFree article

Hardware accelerator for genomic sequence alignment.

Chiang J, Studniberg M, Shaw J, Seto S, Truong K.

Conf Proc IEEE Eng Med Biol Soc. 2006;1:5787-9.PMID: 17946720 [PubMed - indexed for MEDLINE]Related articles

Fast splice site detection using information content and feature reduction.

Baten AK, Halgamuge SK, Chang BC.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S8.PMID: 19091031 [PubMed - indexed for MEDLINE]Related articlesFree article

Texture segmentation by genetic programming.

Song A, Ciesielski V.

Evol Comput. 2008 Winter;16(4):461-81.PMID: 19053495 [PubMed - indexed for MEDLINE]Related articles

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations.

Corander J, Marttinen P, Sirén J, Tang J.

BMC Bioinformatics. 2008 Dec 16;9:539.PMID: 19087322 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic discovery of cross-family sequence features associated with protein function.

Brameier M, Haan J, Krings A, MacCallum RM.

BMC Bioinformatics. 2006 Jan 12;7:16.PMID: 16409628 [PubMed - indexed for MEDLINE]Related articlesFree article

A general framework for biclustering gene expression data.

Li H, Chen X, Zhang K, Jiang T.

J Bioinform Comput Biol. 2006 Aug;4(4):911-33.PMID: 17007074 [PubMed - indexed for MEDLINE]Related articles

Parametric complexity of sequence assembly: theory and applications to next generation sequencing.

Nagarajan N, Pop M.

J Comput Biol. 2009 Jul;16(7):897-908.PMID: 19580519 [PubMed - indexed for MEDLINE]Related articles

Efficient composite pattern finding from monad patterns.

Zhou J, Sander J, Lin G.

Int J Bioinform Res Appl. 2007;3(1):86-99.PMID: 18048174 [PubMed - indexed for MEDLINE]Related articles