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Protein subcellular localization prediction for Gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines.

Wang J, Sung WK, Krishnan A, Li KB.

BMC Bioinformatics. 2005 Jul 13;6:174.PMID: 16011808 [PubMed - indexed for MEDLINE]Related articlesFree article

Protein subcellular localization prediction based on compartment-specific features and structure conservation.

Su EC, Chiu HS, Lo A, Hwang JK, Sung TY, Hsu WL.

BMC Bioinformatics. 2007 Sep 8;8:330.PMID: 17825110 [PubMed - indexed for MEDLINE]Related articlesFree article

Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions.

Yu CS, Lin CJ, Hwang JK.

Protein Sci. 2004 May;13(5):1402-6.PMID: 15096640 [PubMed - indexed for MEDLINE]Related articlesFree article

VICMpred: an SVM-based method for the prediction of functional proteins of Gram-negative bacteria using amino acid patterns and composition.

Saha S, Raghava GP.

Genomics Proteomics Bioinformatics. 2006 Feb;4(1):42-7.PMID: 16689701 [PubMed - indexed for MEDLINE]Related articles

pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties.

Sarda D, Chua GH, Li KB, Krishnan A.

BMC Bioinformatics. 2005 Jun 17;6:152.PMID: 15963230 [PubMed - indexed for MEDLINE]Related articlesFree article

Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs.

Rashid M, Saha S, Raghava GP.

BMC Bioinformatics. 2007 Sep 13;8:337.PMID: 17854501 [PubMed - indexed for MEDLINE]Related articlesFree article

ProLoc-GO: utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization.

Huang WL, Tung CW, Ho SW, Hwang SF, Ho SY.

BMC Bioinformatics. 2008 Feb 1;9:80.PMID: 18241343 [PubMed - indexed for MEDLINE]Related articlesFree article

Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition.

Tamura T, Akutsu T.

BMC Bioinformatics. 2007 Nov 30;8:466.PMID: 18047679 [PubMed - indexed for MEDLINE]Related articlesFree article

Predicting residue-wise contact orders in proteins by support vector regression.

Song J, Burrage K.

BMC Bioinformatics. 2006 Oct 3;7:425.PMID: 17014735 [PubMed - indexed for MEDLINE]Related articlesFree article

PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria.

Gardy JL, Spencer C, Wang K, Ester M, Tusnády GE, Simon I, Hua S, deFays K, Lambert C, Nakai K, Brinkman FS.

Nucleic Acids Res. 2003 Jul 1;31(13):3613-7.PMID: 12824378 [PubMed - indexed for MEDLINE]Related articlesFree article

Protein subcellular localization prediction based on compartment-specific biological features.

Su CY, Lo A, Chiu HS, Sung TY, Hsu WL.

Comput Syst Bioinformatics Conf. 2006:325-30.PMID: 17369650 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs.

Park KJ, Kanehisa M.

Bioinformatics. 2003 Sep 1;19(13):1656-63.PMID: 12967962 [PubMed - indexed for MEDLINE]Related articlesFree article

Better prediction of protein contact number using a support vector regression analysis of amino acid sequence.

Yuan Z.

BMC Bioinformatics. 2005 Oct 13;6:248.PMID: 16221309 [PubMed - indexed for MEDLINE]Related articlesFree article

PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis.

Gardy JL, Laird MR, Chen F, Rey S, Walsh CJ, Ester M, Brinkman FS.

Bioinformatics. 2005 Mar 1;21(5):617-23. Epub 2004 Oct 22.PMID: 15501914 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information.

Song J, Burrage K, Yuan Z, Huber T.

BMC Bioinformatics. 2006 Mar 9;7:124.PMID: 16526956 [PubMed - indexed for MEDLINE]Related articlesFree article

SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences.

Kurgan L, Cios K, Chen K.

BMC Bioinformatics. 2008 May 1;9:226.PMID: 18452616 [PubMed - indexed for MEDLINE]Related articlesFree article

Predicting protein structural class based on multi-features fusion.

Chen C, Chen LX, Zou XY, Cai PX.

J Theor Biol. 2008 Jul 21;253(2):388-92. Epub 2008 Mar 14.PMID: 18423494 [PubMed - indexed for MEDLINE]Related articles

Subcellular localization prediction with new protein encoding schemes.

Oğul H, Mumcuoğu EU.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Apr-Jun;4(2):227-32.PMID: 17473316 [PubMed - indexed for MEDLINE]Related articles

A novel representation of protein sequences for prediction of subcellular location using support vector machines.

Matsuda S, Vert JP, Saigo H, Ueda N, Toh H, Akutsu T.

Protein Sci. 2005 Nov;14(11):2804-13.PMID: 16251364 [PubMed - indexed for MEDLINE]Related articlesFree article

Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains.

Bulashevska A, Eils R.

BMC Bioinformatics. 2006 Jun 14;7:298.PMID: 16774677 [PubMed - indexed for MEDLINE]Related articlesFree article