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    Results: 1 to 20 of 176

    1.

    AutoFACT: an automatic functional annotation and classification tool.

    Koski LB, Gray MW, Lang BF, Burger G.

    BMC Bioinformatics. 2005 Jun 16;6:151.PMID: 15960857 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    annot8r: GO, EC and KEGG annotation of EST datasets.

    Schmid R, Blaxter ML.

    BMC Bioinformatics. 2008 Apr 9;9:180.PMID: 18400082 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Development and evaluation of an automated annotation pipeline and cDNA annotation system.

    Kasukawa T, Furuno M, Nikaido I, Bono H, Hume DA, Bult C, Hill DP, Baldarelli R, Gough J, Kanapin A, Matsuda H, Schriml LM, Hayashizaki Y, Okazaki Y, Quackenbush J.

    Genome Res. 2003 Jun;13(6B):1542-51.PMID: 12819153 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    ESTree db: a tool for peach functional genomics.

    Lazzari B, Caprera A, Vecchietti A, Stella A, Milanesi L, Pozzi C.

    BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S16.PMID: 16351742 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.

    Hanekamp K, Bohnebeck U, Beszteri B, Valentin K.

    Bioinformatics. 2007 Apr 1;23(7):793-801. Epub 2007 Mar 1.PMID: 17332025 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    PESTAS: a web server for EST analysis and sequence mining.

    Nam SH, Kim DW, Jung TS, Choi YS, Kim DW, Choi HS, Choi SH, Park HS.

    Bioinformatics. 2009 Jul 15;25(14):1846-8. Epub 2009 May 4.PMID: 19414531 [PubMed - indexed for MEDLINE]Related articles

    7.

    GeneTools--application for functional annotation and statistical hypothesis testing.

    Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

    BMC Bioinformatics. 2006 Oct 24;7:470.PMID: 17062145 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.

    Nagaraj SH, Deshpande N, Gasser RB, Ranganathan S.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W143-7. Epub 2007 Jun 1.PMID: 17545197 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    OrthoSelect: a protocol for selecting orthologous groups in phylogenomics.

    Schreiber F, Pick K, Erpenbeck D, Wörheide G, Morgenstern B.

    BMC Bioinformatics. 2009 Jul 16;10:219.PMID: 19607672 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

    Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

    BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    EST databases and web tools for EST projects.

    Shen YQ, O'Brien E, Koski L, Lang BF, Burger G.

    Methods Mol Biol. 2009;533:241-56.PMID: 19277569 [PubMed - indexed for MEDLINE]Related articles

    12.

    JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

    Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

    BMC Bioinformatics. 2006 Nov 23;7:513.PMID: 17123449 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    GarlicESTdb: an online database and mining tool for garlic EST sequences.

    Kim DW, Jung TS, Nam SH, Kwon HR, Kim A, Chae SH, Choi SH, Kim DW, Kim RN, Park HS.

    BMC Plant Biol. 2009 May 18;9:61.PMID: 19445732 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results.

    He J, Dai X, Zhao X.

    BMC Bioinformatics. 2007 Feb 9;8:53.PMID: 17291345 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    WebTraceMiner: a web service for processing and mining EST sequence trace files.

    Liang C, Wang G, Liu L, Ji G, Liu Y, Chen J, Webb JS, Reese G, Dean JF.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W137-42. Epub 2007 May 8.PMID: 17488839 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    cDNA2Genome: a tool for mapping and annotating cDNAs.

    Del Val C, Glatting KH, Suhai S.

    BMC Bioinformatics. 2003 Sep 10;4:39. Print 2003 Sep 10.PMID: 12964951 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB.

    Yamasaki C, Kawashima H, Todokoro F, Imamizu Y, Ogawa M, Tanino M, Itoh T, Gojobori T, Imanishi T.

    Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W345-9.PMID: 16845023 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    PipeOnline 2.0: automated EST processing and functional data sorting.

    Ayoubi P, Jin X, Leite S, Liu X, Martajaja J, Abduraham A, Wan Q, Yan W, Misawa E, Prade RA.

    Nucleic Acids Res. 2002 Nov 1;30(21):4761-9.PMID: 12409467 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    galaxieEST: addressing EST identity through automated phylogenetic analysis.

    Nilsson RH, Rajashekar B, Larsson KH, Ursing BM.

    BMC Bioinformatics. 2004 Jul 5;5:87.PMID: 15236648 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    PROMPT: a protein mapping and comparison tool.

    Schmidt T, Frishman D.

    BMC Bioinformatics. 2006 Jul 4;7:331.PMID: 16817977 [PubMed - indexed for MEDLINE]Related articlesFree article

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