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An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.PMID: 15960829 [PubMed - indexed for MEDLINE]Related articlesFree article

Evaluation of BioCreAtIvE assessment of task 2.

Blaschke C, Leon EA, Krallinger M, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S16. Epub 2005 May 24.PMID: 15960828 [PubMed - indexed for MEDLINE]Related articlesFree article

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.

Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D262-6.PMID: 14681408 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

BMC Bioinformatics. 2007 Jul 10;8:243.PMID: 17620146 [PubMed - indexed for MEDLINE]Related articlesFree article

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

Genome Biol. 2008;9 Suppl 2:S5. Epub 2008 Sep 1.PMID: 18834496 [PubMed - indexed for MEDLINE]Related articlesFree article

The GOA database in 2009--an integrated Gene Ontology Annotation resource.

Barrell D, Dimmer E, Huntley RP, Binns D, O'Donovan C, Apweiler R.

Nucleic Acids Res. 2009 Jan;37(Database issue):D396-403. Epub 2008 Oct 27.PMID: 18957448 [PubMed - indexed for MEDLINE]Related articlesFree article

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation.

Van Auken K, Jaffery J, Chan J, Müller HM, Sternberg PW.

BMC Bioinformatics. 2009 Jul 21;10:228.PMID: 19622167 [PubMed - indexed for MEDLINE]Related articlesFree article

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

Genome Biol. 2008;9 Suppl 2:S1. Epub 2008 Sep 1.PMID: 18834487 [PubMed - indexed for MEDLINE]Related articlesFree article

GOAnnotator: linking protein GO annotations to evidence text.

Couto FM, Silva MJ, Lee V, Dimmer E, Camon E, Apweiler R, Kirsch H, Rebholz-Schuhmann D.

J Biomed Discov Collab. 2006 Dec 20;1:19.PMID: 17181854 [PubMed]Related articlesFree article

Overview of BioCreAtIvE: critical assessment of information extraction for biology.

Hirschman L, Yeh A, Blaschke C, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S1. Epub 2005 May 24.PMID: 15960821 [PubMed - indexed for MEDLINE]Related articlesFree article

Text mining and protein annotations: the construction and use of protein description sentences.

Krallinger M, Malik R, Valencia A.

Genome Inform. 2006;17(2):121-30.PMID: 17503385 [PubMed - indexed for MEDLINE]Related articles

Overview of the protein-protein interaction annotation extraction task of BioCreative II.

Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S4. Epub 2008 Sep 1.PMID: 18834495 [PubMed - indexed for MEDLINE]Related articlesFree article

Data-poor categorization and passage retrieval for gene ontology annotation in Swiss-Prot.

Ehrler F, Geissbühler A, Jimeno A, Ruch P.

BMC Bioinformatics. 2005;6 Suppl 1:S23. Epub 2005 May 24.PMID: 15960836 [PubMed - indexed for MEDLINE]Related articlesFree article

The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro.

Camon E, Magrane M, Barrell D, Binns D, Fleischmann W, Kersey P, Mulder N, Oinn T, Maslen J, Cox A, Apweiler R.

Genome Res. 2003 Apr;13(4):662-72. Epub 2003 Mar 12.PMID: 12654719 [PubMed - indexed for MEDLINE]Related articlesFree article

Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?

Winnenburg R, Wächter T, Plake C, Doms A, Schroeder M.

Brief Bioinform. 2008 Nov;9(6):466-78. Epub 2008 Dec 6. Review.PMID: 19060303 [PubMed - indexed for MEDLINE]Related articles

Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup.

Yeh AS, Hirschman L, Morgan AA.

Bioinformatics. 2003;19 Suppl 1:i331-9.PMID: 12855478 [PubMed - indexed for MEDLINE]Related articlesFree article

Who tangos with GOA?-Use of Gene Ontology Annotation (GOA) for biological interpretation of '-omics' data and for validation of automatic annotation tools.

Lee V, Camon E, Dimmer E, Barrell D, Apweiler R.

In Silico Biol. 2005;5(1):5-8.PMID: 15972001 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene Ontology annotations at SGD: new data sources and annotation methods.

Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM.

Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. Epub 2007 Nov 3.PMID: 17982175 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143.PMID: 18325104 [PubMed - indexed for MEDLINE]Related articlesFree article

Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Müller HM, Kenny EE, Sternberg PW.

PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.PMID: 15383839 [PubMed - indexed for MEDLINE]Related articlesFree article