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    Results: 1 to 20 of 339

    1.

    Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture.

    Li L, Wang X, Xia M, Stolc V, Su N, Peng Z; Waraporn Tongprasit, Li S, Wang J, Wang X, Deng XW.

    Genome Biol. 2005;6(6):R52. Epub 2005 May 27. Erratum in: Genome Biol. 2005;6(8):403. Waraporn Tongprasit [added].

    PMID:
    15960804
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray.

    Stolc V, Li L, Wang X, Li X, Su N, Tongprasit W, Han B, Xue Y, Li J, Snyder M, Gerstein M, Wang J, Deng XW.

    Plant Mol Biol. 2005 Sep;59(1):137-49.

    PMID:
    16217608
    [PubMed - indexed for MEDLINE]
    3.

    Genome-wide transcription analyses in rice using tiling microarrays.

    Li L, Wang X, Stolc V, Li X, Zhang D, Su N, Tongprasit W, Li S, Cheng Z, Wang J, Deng XW.

    Nat Genet. 2006 Jan;38(1):124-9. Epub 2005 Dec 20.

    PMID:
    16369532
    [PubMed - indexed for MEDLINE]
    4.

    A tiling microarray expression analysis of rice chromosome 4 suggests a chromosome-level regulation of transcription.

    Jiao Y, Jia P, Wang X, Su N, Yu S, Zhang D, Ma L, Feng Q, Jin Z, Li L, Xue Y, Cheng Z, Zhao H, Han B, Deng XW.

    Plant Cell. 2005 Jun;17(6):1641-57. Epub 2005 Apr 29.

    PMID:
    15863518
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp. indica).

    Ray S, Agarwal P, Arora R, Kapoor S, Tyagi AK.

    Mol Genet Genomics. 2007 Nov;278(5):493-505. Epub 2007 Jul 18.

    PMID:
    17636330
    [PubMed - indexed for MEDLINE]
    6.

    Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.).

    Mizuno H, Kawahara Y, Sakai H, Kanamori H, Wakimoto H, Yamagata H, Oono Y, Wu J, Ikawa H, Itoh T, Matsumoto T.

    BMC Genomics. 2010 Dec 2;11:683.

    PMID:
    21122150
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Sequence and analysis of rice chromosome 4.

    Feng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, Jia P, Zhang Y, Zhao Q, Ying K, Yu S, Tang Y, Weng Q, Zhang L, Lu Y, Mu J, Lu Y, Zhang LS, Yu Z, Fan D, Liu X, Lu T, Li C, Wu Y, Sun T, Lei H, Li T, Hu H, Guan J, Wu M, Zhang R, Zhou B, Chen Z, Chen L, Jin Z, Wang R, Yin H, Cai Z, Ren S, Lv G, Gu W, Zhu G, Tu Y, Jia J, Zhang Y, Chen J, Kang H, Chen X, Shao C, Sun Y, Hu Q, Zhang X, Zhang W, Wang L, Ding C, Sheng H, Gu J, Chen S, Ni L, Zhu F, Chen W, Lan L, Lai Y, Cheng Z, Gu M, Jiang J, Li J, Hong G, Xue Y, Han B.

    Nature. 2002 Nov 21;420(6913):316-20.

    PMID:
    12447439
    [PubMed - indexed for MEDLINE]
    8.

    A microarray analysis of the rice transcriptome and its comparison to Arabidopsis.

    Ma L, Chen C, Liu X, Jiao Y, Su N, Li L, Wang X, Cao M, Sun N, Zhang X, Bao J, Li J, Pedersen S, Bolund L, Zhao H, Yuan L, Wong GK, Wang J, Deng XW, Wang J.

    Genome Res. 2005 Sep;15(9):1274-83.

    PMID:
    16140994
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Global identification and characterization of transcriptionally active regions in the rice genome.

    Li L, Wang X, Sasidharan R, Stolc V, Deng W, He H, Korbel J, Chen X, Tongprasit W, Ronald P, Chen R, Gerstein M, Deng XW.

    PLoS One. 2007 Mar 14;2(3):e294.

    PMID:
    17372628
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq.

    Lu T, Lu G, Fan D, Zhu C, Li W, Zhao Q, Feng Q, Zhao Y, Guo Y, Li W, Huang X, Han B.

    Genome Res. 2010 Sep;20(9):1238-49. Epub 2010 Jul 13.

    PMID:
    20627892
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis.

    Yazaki J, Shimatani Z, Hashimoto A, Nagata Y, Fujii F, Kojima K, Suzuki K, Taya T, Tonouchi M, Nelson C, Nakagawa A, Otomo Y, Murakami K, Matsubara K, Kawai J, Carninci P, Hayashizaki Y, Kikuchi S.

    Physiol Genomics. 2004 Apr 13;17(2):87-100.

    PMID:
    14982972
    [PubMed - indexed for MEDLINE]
    12.

    Integration of cytological features with molecular and epigenetic properties of rice chromosome 4.

    Yin BL, Guo L, Zhang DF, Terzaghi W, Wang XF, Liu TT, He H, Cheng ZK, Deng XW.

    Mol Plant. 2008 Sep;1(5):816-29. Epub 2008 Aug 8.

    PMID:
    19825584
    [PubMed - indexed for MEDLINE]
    13.

    Towards a better bowl of rice: assigning function to tens of thousands of rice genes.

    Jung KH, An G, Ronald PC.

    Nat Rev Genet. 2008 Feb;9(2):91-101. Review.

    PMID:
    18160965
    [PubMed - indexed for MEDLINE]
    14.

    Evolutionary expansion, gene structure, and expression of the rice wall-associated kinase gene family.

    Zhang S, Chen C, Li L, Meng L, Singh J, Jiang N, Deng XW, He ZH, Lemaux PG.

    Plant Physiol. 2005 Nov;139(3):1107-24.

    PMID:
    16286450
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.

    Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, Jones KM, Kim M, Overton L, Tsitrin T, Fadrosh D, Bera J, Weaver B, Jin S, Johri S, Reardon M, Webb K, Hill J, Moffat K, Tallon L, Van Aken S, Lewis M, Utterback T, Feldblyum T, Zismann V, Iobst S, Hsiao J, de Vazeille AR, Salzberg SL, White O, Fraser C, Yu Y, Kim H, Rambo T, Currie J, Collura K, Kernodle-Thompson S, Wei F, Kudrna K, Ammiraju JS, Luo M, Goicoechea JL, Wing RA, Henry D, Oates R, Palmer M, Pries G, Saski C, Simmons J, Soderlund C, Nelson W, de la Bastide M, Spiegel L, Nascimento L, Huang E, Preston R, Zutavern T, Palmer L, O'Shaughnessy A, Dike S, McCombie WR, Minx P, Cordum H, Wilson R, Jin W, Lee HR, Jiang J, Jackson S; Rice Chromosome 3 Sequencing Consortium.

    Genome Res. 2005 Sep;15(9):1284-91. Epub 2005 Aug 18.

    PMID:
    16109971
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Sequence and expression analysis of the thioredoxin protein gene family in rice.

    Nuruzzaman M, Gupta M, Zhang C, Wang L, Xie W, Xiong L, Zhang Q, Lian X.

    Mol Genet Genomics. 2008 Aug;280(2):139-51. Epub 2008 May 20.

    PMID:
    18491141
    [PubMed - indexed for MEDLINE]
    18.

    Antisense transcripts with rice full-length cDNAs.

    Osato N, Yamada H, Satoh K, Ooka H, Yamamoto M, Suzuki K, Kawai J, Carninci P, Ohtomo Y, Murakami K, Matsubara K, Kikuchi S, Hayashizaki Y.

    Genome Biol. 2003;5(1):R5. Epub 2003 Dec 11.

    PMID:
    14709177
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Transcriptome map for seedling stage specific salinity stress response indicates a specific set of genes as candidate for saline tolerance in Oryza sativa L.

    Kumari S, Sabharwal VP, Kushwaha HR, Sopory SK, Singla-Pareek SL, Pareek A.

    Funct Integr Genomics. 2009 Feb;9(1):109-23. Epub 2008 Jul 2.

    PMID:
    18594887
    [PubMed - indexed for MEDLINE]
    20.

    Rice yellow mottle virus stress responsive genes from susceptible and tolerant rice genotypes.

    Ventelon-Debout M, Tranchant-Dubreuil C, Nguyen TT, Bangratz M, Siré C, Delseny M, Brugidou C.

    BMC Plant Biol. 2008 Mar 3;8:26.

    PMID:
    18315879
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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